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Job: Statistics Lectureships at St Andrews
JobPosting computational statistics
10 months ago Andy Lynch ▴ 120
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476
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multipollutant models
statistics Regression r limma
12 months ago Jitendra ▴ 10
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1
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548
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DEseq2 : Complex design with a mixture of male and female mice
statistics DESeq2
updated 12 months ago by 43k • written 13 months ago by • 0
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1
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558
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Further analysis after limma regression output
statistics Epigenetics limma
updated 15 months ago by 67k • written 15 months ago by ▴ 10
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1
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2.3k
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FPKM t-test vs DEseq2
DESeq2 statistics rna-seq
updated 20 months ago by ★ 4.6k • written 20 months ago by ▴ 10
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3
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1.5k
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batch effect in EPIC array data
statistics Epigenetics R
updated 22 months ago by ▴ 760 • written 22 months ago by ▴ 10
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839
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Job: PhD position in Bioinformatics in Jena
Statistics ComputationalBiology Aging MachineLearning
23 months ago alena.vanboemmel • 0
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2
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979
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Results analysis of differential gene expression using DESeq2 package
RnaSeqSampleSize statistics DESeq2
updated 2.0 years ago by ★ 1.4k • written 2.0 years ago by • 0
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876
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Statistical test for genomic annotation by ChIPseeker
statistics PeakAnnotation ChIPseeker GuangchuangYu
2.4 years ago arisarkar88 ▴ 40
1
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965
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Job: Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
computational teaching statistics research
2.4 years ago Andy Lynch ▴ 120
1
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1.0k
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Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
2.4 years ago Andy Lynch ▴ 120
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6
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1.6k
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regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
2.6 years ago Jitendra ▴ 10
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3
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1.8k
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Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 2.8 years ago by 21k • written 2.9 years ago by ▴ 10
3
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5
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1.6k
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P adjusted values in Deseq2
DESeq2 Statistics
written 3.9 years ago by • 0
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2
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1.2k
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News: Ascona Workshop “Biological systems: from first principles to data-​driven modelling and back” 27. 3. - 1. 4. 2022
theory modeling statistics ascona Workshop
3.2 years ago • updated 23 months ago Wolfgang Huber ★ 13k
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1.3k
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
3.7 years ago • updated 3.6 years ago Luo Weijun ★ 1.6k
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Job: Bioinformatician at MiroBio, Oxford, UK
Transcriptomics Bioconductor Statistics Job Biocon
3.8 years ago m.jackson • 0
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1.1k
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Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
3.9 years ago António Miguel de Jesus Domingues ▴ 510
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1.3k
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Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
4.0 years ago Laura • 0
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1.1k
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R statistics pathview singlecellRNA-Seq
4.1 years ago • updated 3.7 years ago Luo Weijun ★ 1.6k
1
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2
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1.3k
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Re-calculation of Padj (P adjusted value)
statistics Benjamini–Hochberg procedure deseq2
updated 4.2 years ago by 43k • written 4.2 years ago by ▴ 60
2
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0
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1.0k
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Job: Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology statistics bioinformatics Job
4.2 years ago Johannes Rainer ★ 2.1k
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911
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Job: Two Bioinformatics Fellowship Positions at US EPA
bioinformatics toxicology Job sequenicng statistics
4.4 years ago • updated 4.1 years ago whduke • 0
0
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2.1k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
6.5 years ago • updated 4.1 years ago Luo Weijun ★ 1.6k
1
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1.1k
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Job: Post-Doctoral Research Fellow, Cancer Genomics
genomics seattle bioinformatics data science statistics Job
4.6 years ago Fred Hutch (Recruiting) ▴ 40
3
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2.4k
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Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
5.1 years ago • updated 5.0 years ago Gordon Smyth 52k
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1.5k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
5.9 years ago • updated 5.0 years ago Luo Weijun ★ 1.6k
0
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1
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980
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How to handle batch effect and interaction with experimental variables
deseq2 statistics differential expression
5.1 years ago A • 0
0
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1
reply
932
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Exclude interaction terms from the design
deseq2 statistics modelling
updated 5.2 years ago by 43k • written 5.2 years ago by • 0
2
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2
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3.7k
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How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 5.2 years ago by 52k • written 5.2 years ago by ▴ 10
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1.2k
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Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
5.3 years ago tatabox • 0
3
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3
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1.7k
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Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2 apeglm statistics
updated 5.6 years ago by 43k • written 5.6 years ago by • 0
0
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1
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1.1k
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
5.9 years ago naglemi ▴ 10
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0
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930
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package for mismatch distribution?
genetics statistics
5.9 years ago myriam.croze07 • 0
1
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6
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3.2k
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DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 22 months ago by 43k • written 6.0 years ago by • 0
1
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2
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1.1k
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Newbie to all of this
bioconductor statistics
6.2 years ago sportwoo • 0
8
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8
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7.7k
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Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 6.2 years ago by ★ 7.9k • written 6.2 years ago by ▴ 60
1
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2
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1.1k
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What to do with microarray probes that catch multiple genes?
affymetrix microarrays microarray probe statistics
updated 6.3 years ago by 67k • written 6.3 years ago by • 0
1
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4
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1.4k
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Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
6.3 years ago Andrea Carenzo • 0
0
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2
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1.3k
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comparing two GOstats result lists
gostats statistics
updated 6.5 years ago by 67k • written 6.5 years ago by ▴ 30
1
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0
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1.4k
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Job: Statistical Research Associate
biostatistics statistics sas git assay Job
6.6 years ago Fred Hutch (Recruiting) ▴ 40
0
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0
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1.4k
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DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
6.7 years ago floriandeckert ▴ 30
0
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0
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1.3k
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News: SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
single cell cancer genomics statistics News
6.7 years ago kieranrcampbell ▴ 50
0
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0
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1.4k
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Two questions about pathifier package
pathways statistics microarray
6.9 years ago arronar • 0
27
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7
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12k
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Effect of lfcThreshold on p-value in DESeq2
deseq2 rnaseq statistics
updated 14 months ago by ▴ 10 • written 7.2 years ago by ▴ 40
2
votes
4
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1.4k
views
Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 7.2 years ago by ★ 13k • written 7.2 years ago by ▴ 90
0
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0
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1.3k
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Assigning stats to differential peak locations relative to TSS
chipseeker chipseq statistics
7.2 years ago rbronste ▴ 60
0
votes
0
replies
1.7k
views
Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
7.9 years ago • updated 7.7 years ago Luo Weijun ★ 1.6k
1
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2
replies
2.2k
views
how to perform pre ranked GSEA in R?
r microarray statistics GSEA
updated 7.8 years ago by • 0 • written 9.8 years ago by ▴ 80
0
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0
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1.4k
views
Job: Bioinformaticist, Research Programmer
R genomics statistics Job
7.8 years ago radel • 0
50 results • Page 1 of 1
Recent ...
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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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