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Job: Statistics Lectureships at St Andrews
JobPosting computational statistics
11 months ago Andy Lynch ▴ 120
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0
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490
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multipollutant models
statistics Regression r limma
13 months ago Jitendra ▴ 10
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1
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579
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DEseq2 : Complex design with a mixture of male and female mice
statistics DESeq2
updated 14 months ago by 43k • written 14 months ago by • 0
1
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1
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566
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Further analysis after limma regression output
statistics Epigenetics limma
updated 16 months ago by 67k • written 16 months ago by ▴ 10
1
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1
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2.4k
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FPKM t-test vs DEseq2
DESeq2 statistics rna-seq
updated 21 months ago by ★ 4.6k • written 21 months ago by ▴ 10
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3
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1.6k
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batch effect in EPIC array data
statistics Epigenetics R
updated 23 months ago by ▴ 760 • written 23 months ago by ▴ 10
0
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0
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851
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Job: PhD position in Bioinformatics in Jena
Statistics ComputationalBiology Aging MachineLearning
2.0 years ago alena.vanboemmel • 0
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2
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1.0k
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Results analysis of differential gene expression using DESeq2 package
RnaSeqSampleSize statistics DESeq2
updated 2.1 years ago by ★ 1.4k • written 2.1 years ago by • 0
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896
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Statistical test for genomic annotation by ChIPseeker
statistics PeakAnnotation ChIPseeker GuangchuangYu
2.4 years ago arisarkar88 ▴ 40
1
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0
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979
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Job: Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
computational teaching statistics research
2.5 years ago Andy Lynch ▴ 120
1
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0
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1.0k
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Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
2.5 years ago Andy Lynch ▴ 120
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6
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1.6k
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regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
2.7 years ago Jitendra ▴ 10
0
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3
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1.8k
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Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 2.9 years ago by 21k • written 3.0 years ago by ▴ 10
3
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5
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1.6k
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P adjusted values in Deseq2
DESeq2 Statistics
written 4.0 years ago by • 0
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2
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1.3k
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News: Ascona Workshop “Biological systems: from first principles to data-​driven modelling and back” 27. 3. - 1. 4. 2022
theory modeling statistics ascona Workshop
3.3 years ago • updated 24 months ago Wolfgang Huber ★ 13k
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1.3k
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
3.8 years ago • updated 3.7 years ago Luo Weijun ★ 1.6k
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1.1k
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Job: Bioinformatician at MiroBio, Oxford, UK
Transcriptomics Bioconductor Statistics Job Biocon
3.9 years ago m.jackson • 0
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1.1k
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Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
4.0 years ago António Miguel de Jesus Domingues ▴ 510
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1.3k
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Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
4.1 years ago Laura • 0
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0
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1.1k
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R statistics pathview singlecellRNA-Seq
4.2 years ago • updated 3.8 years ago Luo Weijun ★ 1.6k
1
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2
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1.4k
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Re-calculation of Padj (P adjusted value)
statistics Benjamini–Hochberg procedure deseq2
updated 4.3 years ago by 43k • written 4.3 years ago by ▴ 60
2
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0
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1.1k
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Job: Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology statistics bioinformatics Job
4.3 years ago Johannes Rainer ★ 2.1k
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922
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Job: Two Bioinformatics Fellowship Positions at US EPA
bioinformatics toxicology Job sequenicng statistics
4.5 years ago • updated 4.2 years ago whduke • 0
0
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2.1k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
6.5 years ago • updated 4.2 years ago Luo Weijun ★ 1.6k
1
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0
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1.1k
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Job: Post-Doctoral Research Fellow, Cancer Genomics
genomics seattle bioinformatics data science statistics Job
4.7 years ago Fred Hutch (Recruiting) ▴ 40
3
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2.5k
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Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
5.2 years ago • updated 5.1 years ago Gordon Smyth 52k
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1.5k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
6.0 years ago • updated 5.1 years ago Luo Weijun ★ 1.6k
0
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1
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995
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How to handle batch effect and interaction with experimental variables
deseq2 statistics differential expression
5.2 years ago A • 0
0
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1
reply
947
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Exclude interaction terms from the design
deseq2 statistics modelling
updated 5.3 years ago by 43k • written 5.3 years ago by • 0
2
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2
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3.8k
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How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 5.3 years ago by 52k • written 5.3 years ago by ▴ 10
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1.2k
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Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
5.4 years ago tatabox • 0
3
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3
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1.8k
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Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2 apeglm statistics
updated 5.6 years ago by 43k • written 5.6 years ago by • 0
0
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1
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1.1k
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
6.0 years ago naglemi ▴ 10
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0
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944
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package for mismatch distribution?
genetics statistics
6.0 years ago myriam.croze07 • 0
1
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6
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3.2k
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DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 23 months ago by 43k • written 6.1 years ago by • 0
1
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2
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1.1k
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Newbie to all of this
bioconductor statistics
6.3 years ago sportwoo • 0
8
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8
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7.9k
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Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 6.3 years ago by ★ 7.9k • written 6.3 years ago by ▴ 60
1
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2
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1.2k
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What to do with microarray probes that catch multiple genes?
affymetrix microarrays microarray probe statistics
updated 6.4 years ago by 67k • written 6.4 years ago by • 0
1
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4
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1.4k
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Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
6.4 years ago Andrea Carenzo • 0
0
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2
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1.3k
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comparing two GOstats result lists
gostats statistics
updated 6.6 years ago by 67k • written 6.6 years ago by ▴ 30
1
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0
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1.4k
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Job: Statistical Research Associate
biostatistics statistics sas git assay Job
6.7 years ago Fred Hutch (Recruiting) ▴ 40
0
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0
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1.4k
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DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
6.8 years ago floriandeckert ▴ 30
0
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0
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1.3k
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News: SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
single cell cancer genomics statistics News
6.8 years ago kieranrcampbell ▴ 50
0
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0
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1.4k
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Two questions about pathifier package
pathways statistics microarray
7.0 years ago arronar • 0
27
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7
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12k
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Effect of lfcThreshold on p-value in DESeq2
deseq2 rnaseq statistics
updated 15 months ago by ▴ 10 • written 7.3 years ago by ▴ 40
2
votes
4
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1.4k
views
Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 7.3 years ago by ★ 13k • written 7.3 years ago by ▴ 90
0
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0
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1.4k
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Assigning stats to differential peak locations relative to TSS
chipseeker chipseq statistics
7.3 years ago rbronste ▴ 60
0
votes
0
replies
1.8k
views
Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
7.9 years ago • updated 7.8 years ago Luo Weijun ★ 1.6k
1
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2
replies
2.3k
views
how to perform pre ranked GSEA in R?
r microarray statistics GSEA
updated 7.9 years ago by • 0 • written 9.9 years ago by ▴ 80
0
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0
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1.4k
views
Job: Bioinformaticist, Research Programmer
R genomics statistics Job
7.9 years ago radel • 0
50 results • Page 1 of 1
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Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by QN ▴ 10
Thank you ATpoint for your response! In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…
Comment: EdgeR Biological CVs by ATpoint ★ 4.6k
"Joseph" is a spam bot...
Answer: How to sort negative log2FC or FC in RNAseq for GSEA? by ATpoint ★ 4.6k
GSEA asks whether there are general shifts in gene expression towards certain terms. Hence, you would not split your results tables but ord…
Comment: EdgeR Biological CVs by James • 0
Thank you Gordon and Joseph. I presume question (1) would be answered by using a prior G0 of 0? For question (2), I was expecting a biolog…
Answer: EdgeR Biological CVs by Gordon Smyth 52k
I think your questions are answered by the published paper. You might also like to consult recent papers on edgeR by Yunshun Chen and Pedro…
Votes
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Answer: EdgeR Biological CVs
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
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