Showing : statisticalmethod • reset
1
vote
2
replies
242
views
Detecting genomic signatures of drug resistance breast cancer in transcriptomic data
TransOmicsData signatureSearchData StatisticalMethod
written 11 weeks ago by • 0
0
votes
1
reply
394
views
Can we compare 3 different experimental conditions with DESeq2?
DESeq2 StatisticalMethod
updated 8 months ago by ★ 1.4k • written 8 months ago by • 0
0
votes
0
replies
320
views
Job: Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod Evolution QuantitativeTrailLocus Genetics JobPosting
8 months ago pierre.devillemereuil • 0
0
votes
3
replies
926
views
Differences in differential analysis methods for RNA-Seq
DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq
updated 9 months ago by ★ 4.6k • written 9 months ago by • 0
2
votes
2
replies
2.3k
views
DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2 medianofratiostransformation StatisticalMethod Normalization dispersion
13 months ago Linton • 0
1
vote
2
replies
931
views
How to perform longitudinal analysis using EdgeR
StatisticalMethod FoldChange edgeR RNASeq
13 months ago Sabiha ▴ 20
2
votes
2
replies
753
views
DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
14 months ago Manthos • 0
5
votes
2
replies
1.5k
views
DecideTest vs topTAGs in edgeR
RNAseq StatisticalMethod edgeR
updated 15 months ago by 52k • written 15 months ago by ▴ 10
3
votes
2
replies
935
views
Does this RNAseq experiment require a repeated measures approach?
StatisticalMethod RNASeqData edgeR DESeq2
updated 19 months ago by 52k • written 19 months ago by ▴ 30
2
votes
3
replies
2.9k
views
deseq2 normalization and statistical method
normalization deseq2 StatisticalMethod
updated 22 months ago by ★ 4.6k • written 23 months ago by ▴ 10
2
votes
4
replies
1.0k
views
Model comparison in mean-dispersion trend in DESeq2
DESeq2 StatisticalMethod
23 months ago Loïc • 0
0
votes
2
replies
1.1k
views
Using Multi-Dimensional Scaling (MDS) to produce a vector in order to account for patient bias when constructing DGE lists from RNA-seq datasets in R?
PrincipalComponent StatisticalMethod edgeR MultidimensionalScaling Normalization
24 months ago rcreswell01 • 0
1
vote
3
replies
1.3k
views
Limma-voom with inverse probability weights (similar to sample weights)
limma limma-voom StatisticalMethod
updated 2.0 years ago by 52k • written 2.0 years ago by ▴ 10
0
votes
1
reply
693
views
DESeq2 paired multifactor test
DESeq2 StatisticalMethod
updated 2.2 years ago by 43k • written 2.3 years ago by ▴ 10
0
votes
0
replies
830
views
Job: Academic position in Non-clinical Biostatistics
JobPosting StatisticalMethod
2.3 years ago Laurent Gatto 1.6k
1
vote
2
replies
1.3k
views
Limma adj.p.value the same for many different p.values
limmaGUI limma adj.p.value StatisticalMethod
2.4 years ago walkerrh95 • 0
0
votes
0
replies
1.1k
views
Job: Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's StatisticalMethod Genetics molecularQTL FunctionalGenomics
2.4 years ago gaow • 0
0
votes
0
replies
722
views
Should I adjust p value for multi-levels (groups) and multi-variables?
StatisticalMethod
2.9 years ago dong ▴ 10
2
votes
3
replies
5.0k
views
Differential gene expression and (adjusted) p-values
edgeR StatisticalMethod
updated 2.8 years ago by • 0 • written 3.0 years ago by • 0
6
votes
4
replies
1.3k
views
Limma prametrization
limm MathematicalBiology limmaGUI StatisticalMethod
3.1 years ago Giovanni • 0
2
votes
7
replies
1.8k
views
EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on individual patients not combined
edgeR StatisticalMethod
3.4 years ago Field -Ye • 0
0
votes
2
replies
1.8k
views
To retrieve the transcript from gff file with the longest isoform
FunctionalAnnotation StatisticalMethod
3.6 years ago Aneesha • 0
0
votes
1
reply
942
views
DESeq2 Design matrix
StatisticalMethod DESeq2
updated 3.7 years ago by 43k • written 3.7 years ago by • 0
6
votes
6
replies
2.1k
views
limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 3.9 years ago by 52k • written 3.9 years ago by ▴ 10
1
vote
3
replies
1.4k
views
How to assign random effect factor in DESeq2 desing?
StatisticalMethod DESeq2 phyloseq
updated 4.0 years ago by 43k • written 4.0 years ago by • 0
0
votes
0
replies
1.5k
views
Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
4.1 years ago jol.espinoz ▴ 40
0
votes
2
replies
894
views
p adjusted value not available
StatisticalMethod DESeq2
updated 4.2 years ago by ★ 4.0k • written 4.2 years ago by • 0
27 results • Page 1 of 1
Recent ...
Replies
Comment: WGCNA coupled with differential expression analysis: question about baseline mod by hetaf16210 • 0
@[slope][1] If feasible, consider conducting both analyses. Start with a pooled analysis to identify broad patterns, then conduct separate …
Comment: DESeq2 adujsted p-value cutoff seemingly not working by 980linnet • 0
Stuck on DESeq2 with alpha=.05 for padj cutoff. Can't seem to get the differential expression analysis to stick the landing - it's like try…
Comment: internal error in trio library when trying to use lfmm() in LEA package by PW • 0
>ERROR: unable to open file D://anole_geno.snmf/K1/run1/anole_geno_r1.1.Q. Please, check that the name of the file you provided is correct.…
Comment: DESeq2 adujsted p-value cutoff seemingly not working by Guilherme • 0
Thank you for your answer So the proper way to conduct the analysis is to put the filters in the results() function and later filter the da…
Comment: DiffBind - observation that the default union overlap is actually a gap of 1 bp by Ian D. ▴ 70
Please can you comment on this @rory.
Votes
A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
Awards • All
Popular Question to ruwaa.ibrahem • 0
Popular Question to ramiro.barrantes ▴ 10
Popular Question to Vincent J. Carey, Jr. 6.7k
Teacher to Gordon Smyth 52k
Scholar to James W. MacDonald 68k
Locations • All
Australia, 36 minutes ago
India, 37 minutes ago
Switzerland, 2 hours ago
United States, 2 hours ago
United States, 2 hours ago
Traffic: 1043 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6