Bioconductor Standard error

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1.6k

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deseq2 log2fc standard error timecourse

updated 7.1 years ago by ellascottgm • 0 • written 7.1 years ago by Verena • 0

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21k

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deseq2 deseq lfc lfcse standard error

updated 7.9 years ago by rraadd_8 • 0 • written 8.0 years ago by tootiki • 0

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2.9k

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metagenomeseq logfc paired samples standard error

updated 2.6 years ago by tom830979 • 0 • written 8.5 years ago by manasishah86 ▴ 30

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2.4k

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edger standard error glmfit

8.7 years ago david.hughes • 0

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2.6k

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limma standard error

8.7 years ago José Luis Lavín ▴ 10

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12k

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rnaseq deseq2 deseq standard error confidence interval

updated 3.3 years ago by Michael Love 43k • written 8.9 years ago by lisa.crossman ▴ 10

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8.9k

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effect size Limma toptable Standard Error

updated 9.6 years ago by Gordon Smyth 52k • written 9.6 years ago by Vani ▴ 20

7 results • Page 1 of 1

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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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