Bioconductor SsGSEA

Showing : ssGSEA • reset

vote

replies

1.1k

views

enrichment GSVA ssGSEA

updated 3 months ago by Tyler Sagendorf ▴ 10 • written 4 months ago by Bob ▴ 10

votes

588

views

ssgsea GSVA gsea

updated 5 months ago by Axel Klenk ★ 1.1k • written 5 months ago by Bioinformagician • 0

votes

replies

1.1k

views

DESeq2 GSVA ssGSEA

updated 8 months ago by Robert Castelo ★ 3.4k • written 8 months ago by michelafrancesconi8 • 0

votes

replies

2.7k

views

ssgsea GSVA biotype proteincoding msigdb

updated 4 months ago by Ginny • 0 • written 14 months ago by snijesh ▴ 200

vote

replies

8.3k

views

enrichment GSVA enrichplot ssGSEA

updated 2.8 years ago by Robert Castelo ★ 3.4k • written 2.8 years ago by Davide • 0

votes

2.8k

views

gsea ssgsea gsva pathways

updated 4.6 years ago by Robert Castelo ★ 3.4k • written 4.6 years ago by igor ▴ 50

votes

replies

21k

views

ssgsea gsva piano egsea

updated 14 months ago by amin8w ▴ 10 • written 7.5 years ago by sina.nassiri ▴ 130

vote

replies

2.8k

views

gsea gsva ssgsea

7.0 years ago jaison75 ▴ 20

votes

3.7k

views

gsva ssgsea

9.2 years ago Momeneh Foroutan ▴ 10

9 results • Page 1 of 1

Recent ...

Replies

Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Votes

Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

Awards • All

Teacher to Axel Klenk ★ 1.1k