Showing : simpleaffy • reset
5
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Although I successfully installed the package "simpleaffy'' , I cannot library it. Why?
simpleaffy
updated 11 months ago by 68k • written 3.3 years ago by • 0
0
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1
reply
992
views
Error using simpleaffy
software error simpleaffy genefilter
updated 5.7 years ago by 68k • written 5.7 years ago by • 0
4
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3
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1.4k
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GCRMA not working inside tryCatch block in R
gcrma simpleaffy error handling trycatch
updated 6.6 years ago by 68k • written 6.6 years ago by • 0
2
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8
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5.0k
views
Clariom D Human Microarray CDF file to package
simpleaffy makecdfenv
8.6 years ago jayme.rickman • 0
0
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0
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1.6k
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Export expressionSet to ArrayExpress "processed data"
expressionset simpleaffy arrayexpress tsv
8.7 years ago Steffen Neumann ▴ 30
0
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1
reply
1.1k
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simpleaffy issue with empty PairComp calls slot
simpleaffy microarray r
updated 9.7 years ago by 68k • written 9.7 years ago by • 0
1
vote
3
replies
2.2k
views
QC probes in HTA2-0
affy qc simpleaffy HTA
updated 10.1 years ago by 68k • written 10.1 years ago by ▴ 40
1
vote
3
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2.1k
views
QC for Affymetrix miRNA 4.0 arrays: Error from qc/QCReport
simpleaffy affy affyQCReport
10.2 years ago federico.comoglio ▴ 100
0
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3
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1.5k
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Is a subset of my arrays from degraded RNA?
Microarray GO Clustering affy affyPLM simpleaffy Microarray GO Clustering affy affyPLM
10.8 years ago Peter Davidsen ▴ 210
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0
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1.8k
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QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
11.6 years ago b a ▴ 40
0
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0
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1.2k
views
QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
11.6 years ago b a ▴ 40
0
votes
3
replies
8.0k
views
Error: cannot allocate vector of size
gcrma simpleaffy gcrma simpleaffy
updated 11.8 years ago by 68k • written 11.8 years ago by ▴ 50
0
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3
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1.4k
views
simple
GO simpleaffy GO simpleaffy
updated 11.8 years ago by 68k • written 11.8 years ago by ★ 13k
0
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1
reply
1.2k
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Problem when loading simpleaffy package
simpleaffy simpleaffy
updated 11.9 years ago by 25k • written 11.9 years ago by ▴ 40
0
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2
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1.5k
views
results.summary function returns error
Microarray Annotation hgu133a simpleaffy Microarray Annotation hgu133a simpleaffy
updated 12.4 years ago by 68k • written 12.4 years ago by ★ 13k
0
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0
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1.3k
views
Issue with Genome Graphs
Annotation simpleaffy oligo GenomeGraphs frma Annotation simpleaffy oligo GenomeGraphs
12.5 years ago Jeremy Ng ▴ 180
0
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0
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1.2k
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Simpleaffy error : No methods found in "Biobase" for requests: geneNames
simpleaffy simpleaffy
12.5 years ago Matthew Thornton ▴ 380
0
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0
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1.5k
views
library(simpleaffy) error
simpleaffy simpleaffy
12.5 years ago Matthew Thornton ▴ 380
0
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1
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2.3k
views
simpleaffy() not recognizing cdf file
cdf simpleaffy cdf simpleaffy
updated 12.6 years ago by 68k • written 12.6 years ago by ★ 13k
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0
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1.4k
views
Odd warning in simpleaffy, using quality control
cdf simpleaffy cdf simpleaffy
13.0 years ago ejulia ▴ 10
0
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1
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2.7k
views
Mas5 log transformed data
Microarray Normalization simpleaffy Microarray Normalization simpleaffy
updated 13.1 years ago by 68k • written 13.1 years ago by ★ 13k
0
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2
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2.1k
views
Odd warning in simpleaffy, using quality control
cdf probe simpleaffy ArrayExpress cdf probe simpleaffy ArrayExpress
updated 13.2 years ago by ▴ 280 • written 13.2 years ago by ▴ 740
0
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0
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1.4k
views
Odd warning in simpleaffy, using quality control
cdf simpleaffy ArrayExpress cdf simpleaffy ArrayExpress
13.2 years ago David Westergaard ▴ 280
0
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1
reply
1.2k
views
[simpleaffy] maizecdf.qcdef
simpleaffy simpleaffy
13.6 years ago boczniak767 ▴ 740
0
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4
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2.0k
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Microarray query
simpleaffy simpleaffy
updated 14.0 years ago by ▴ 580 • written 14.0 years ago by ▴ 40
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1
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1.2k
views
(no subject)
simpleaffy simpleaffy
updated 14.0 years ago by ★ 13k • written 14.0 years ago by ▴ 40
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0
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1.3k
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quality control of affy Chips for miRNA
miRNA cdf probe affy simpleaffy affyQCReport affycoretools arrayQualityMetrics miRNA cdf
14.2 years ago Assa Yeroslaviz ★ 1.5k
0
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1
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1.2k
views
quality control of affy Chips for miRNA
miRNA cdf affy simpleaffy affyQCReport affycoretools miRNA cdf affy simpleaffy
updated 14.2 years ago by 68k • written 14.2 years ago by ★ 1.5k
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3
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1.2k
views
Quality Control of Exon arrays using xps?
simpleaffy simpleaffy
updated 14.4 years ago by ★ 3.9k • written 14.4 years ago by ▴ 170
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0
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1.3k
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drosophila2cdf in simpleaffy / affyQCReport
cdf simpleaffy affyQCReport cdf simpleaffy affyQCReport
14.5 years ago Assa Yeroslaviz ★ 1.5k
0
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2
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1.7k
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one problem about IRanges Package
simpleaffy IRanges simpleaffy IRanges
updated 14.5 years ago by 6.7k • written 14.5 years ago by ▴ 50
0
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0
replies
991
views
Simpleaffy problems
Annotation probe affy matchprobes simpleaffy AnnotationDbi Annotation probe affy
14.6 years ago James W. MacDonald 68k
0
votes
1
reply
953
views
problem in installing simpleaffy packeges
simpleaffy simpleaffy
updated 14.9 years ago by 25k • written 14.9 years ago by ▴ 20
0
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0
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1.1k
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question regarding qc function in simpleaffy package
cdf affy simpleaffy cdf affy simpleaffy
15.1 years ago Groot, Philip de ▴ 630
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0
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2.0k
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Error in getCdfInfo(object)
cdf simpleaffy cdf simpleaffy
15.1 years ago Arun A K ▴ 20
0
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0
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1.1k
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question regarding qc function in simpleaffy package
cdf affy simpleaffy cdf affy simpleaffy
15.1 years ago James Anderson ▴ 820
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0
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923
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question about QC and Simpleaffy package
simpleaffy simpleaffy
15.3 years ago James Anderson ▴ 820
0
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5
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1.9k
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simpleAffy QC on HT_HG-U133_Plus_PM
cdf affy simpleaffy cdf affy simpleaffy
15.4 years ago Michael Walter ▴ 160
0
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1
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1.5k
views
Group samples on heatmap?
simpleaffy simpleaffy
updated 15.7 years ago by 68k • written 15.8 years ago by ▴ 220
0
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3
replies
1.5k
views
qc in simpleaffy
GO simpleaffy GO simpleaffy
16.0 years ago Mayte Suarez-Farinas ▴ 510
0
votes
1
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1.7k
views
SimpeAffy: how to get/generate qcdef file?
cdf probe affy simpleaffy cdf probe affy simpleaffy
updated 16.2 years ago by ▴ 30 • written 16.2 years ago by ▴ 170
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0
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983
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SimpeAffy: how to get/generate qcdef file?
cdf simpleaffy cdf simpleaffy
16.2 years ago Renaud Gaujoux ▴ 170
0
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2
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1.5k
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Problem with Annotation of Mouse4302.db in simpleaffy
Annotation mouse4302 simpleaffy GLAD Annotation mouse4302 simpleaffy GLAD
updated 16.2 years ago by 68k • written 16.2 years ago by ▴ 40
0
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1.2k
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simpleaffy with hgu133plus2
hgu133plus2 simpleaffy hgu133plus2 simpleaffy
16.3 years ago dorothyc ▴ 140
0
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2
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1.3k
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Simpleaffy: how are 3/5 ratios calculated
graph simpleaffy PROcess graph simpleaffy PROcess
updated 16.6 years ago by ▴ 320 • written 16.6 years ago by ▴ 50
0
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1
reply
972
views
Background values
Microarray gcrma simpleaffy Microarray gcrma simpleaffy
updated 16.7 years ago by ★ 13k • written 16.7 years ago by ▴ 160
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1
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1.4k
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library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer cdf affy simpleaffy affyQCReport affyio arrayQualityMetrics Cancer cdf affy
updated 16.7 years ago by ★ 5.5k • written 16.7 years ago by ▴ 200
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0
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1.0k
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simpleaffy pairwise.comparison problem
simpleaffy simpleaffy
16.8 years ago David Ruau ▴ 190
0
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12
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2.5k
views
Building BioC 2.2 with R 2.7.0
GO annaffy simpleaffy GO annaffy simpleaffy
updated 16.9 years ago by ▴ 630 • written 16.9 years ago by ▴ 160
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1
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1.0k
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simpleAffy with bovine cdf
cdf simpleaffy cdf simpleaffy
17.0 years ago Paul Geeleher ★ 1.3k
50 results • Page 1 of 1
Recent ...
Replies
Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender by donnycrimson • 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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