Showing : simpleaffy • reset
5
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3.6k
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Although I successfully installed the package "simpleaffy'' , I cannot library it. Why?
simpleaffy
updated 11 months ago by 68k • written 3.2 years ago by • 0
0
votes
1
reply
977
views
Error using simpleaffy
software error simpleaffy genefilter
updated 5.6 years ago by 68k • written 5.6 years ago by • 0
4
votes
3
replies
1.4k
views
GCRMA not working inside tryCatch block in R
gcrma simpleaffy error handling trycatch
updated 6.5 years ago by 68k • written 6.5 years ago by • 0
2
votes
8
replies
4.9k
views
Clariom D Human Microarray CDF file to package
simpleaffy makecdfenv
8.6 years ago jayme.rickman • 0
0
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0
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1.6k
views
Export expressionSet to ArrayExpress "processed data"
expressionset simpleaffy arrayexpress tsv
8.7 years ago Steffen Neumann ▴ 30
0
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1
reply
1.1k
views
simpleaffy issue with empty PairComp calls slot
simpleaffy microarray r
updated 9.7 years ago by 68k • written 9.7 years ago by • 0
1
vote
3
replies
2.2k
views
QC probes in HTA2-0
affy qc simpleaffy HTA
updated 10.1 years ago by 68k • written 10.1 years ago by ▴ 40
1
vote
3
replies
2.1k
views
QC for Affymetrix miRNA 4.0 arrays: Error from qc/QCReport
simpleaffy affy affyQCReport
10.1 years ago federico.comoglio ▴ 100
0
votes
3
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1.5k
views
Is a subset of my arrays from degraded RNA?
Microarray GO Clustering affy affyPLM simpleaffy Microarray GO Clustering affy affyPLM
10.7 years ago Peter Davidsen ▴ 210
0
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0
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1.8k
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QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
11.5 years ago b a ▴ 40
0
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0
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1.2k
views
QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
11.5 years ago b a ▴ 40
0
votes
3
replies
8.0k
views
Error: cannot allocate vector of size
gcrma simpleaffy gcrma simpleaffy
updated 11.7 years ago by 68k • written 11.7 years ago by ▴ 50
0
votes
3
replies
1.4k
views
simple
GO simpleaffy GO simpleaffy
updated 11.7 years ago by 68k • written 11.7 years ago by ★ 13k
0
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1
reply
1.2k
views
Problem when loading simpleaffy package
simpleaffy simpleaffy
updated 11.8 years ago by 25k • written 11.8 years ago by ▴ 40
0
votes
2
replies
1.5k
views
results.summary function returns error
Microarray Annotation hgu133a simpleaffy Microarray Annotation hgu133a simpleaffy
updated 12.4 years ago by 68k • written 12.4 years ago by ★ 13k
0
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0
replies
1.3k
views
Issue with Genome Graphs
Annotation simpleaffy oligo GenomeGraphs frma Annotation simpleaffy oligo GenomeGraphs
12.4 years ago Jeremy Ng ▴ 180
0
votes
0
replies
1.2k
views
Simpleaffy error : No methods found in "Biobase" for requests: geneNames
simpleaffy simpleaffy
12.5 years ago Matthew Thornton ▴ 380
0
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0
replies
1.4k
views
library(simpleaffy) error
simpleaffy simpleaffy
12.5 years ago Matthew Thornton ▴ 380
0
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1
reply
2.3k
views
simpleaffy() not recognizing cdf file
cdf simpleaffy cdf simpleaffy
updated 12.5 years ago by 68k • written 12.5 years ago by ★ 13k
0
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0
replies
1.4k
views
Odd warning in simpleaffy, using quality control
cdf simpleaffy cdf simpleaffy
13.0 years ago ejulia ▴ 10
0
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1
reply
2.7k
views
Mas5 log transformed data
Microarray Normalization simpleaffy Microarray Normalization simpleaffy
updated 13.0 years ago by 68k • written 13.0 years ago by ★ 13k
0
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2
replies
2.1k
views
Odd warning in simpleaffy, using quality control
cdf probe simpleaffy ArrayExpress cdf probe simpleaffy ArrayExpress
updated 13.1 years ago by ▴ 280 • written 13.1 years ago by ▴ 740
0
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0
replies
1.4k
views
Odd warning in simpleaffy, using quality control
cdf simpleaffy ArrayExpress cdf simpleaffy ArrayExpress
13.1 years ago David Westergaard ▴ 280
0
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1
reply
1.2k
views
[simpleaffy] maizecdf.qcdef
simpleaffy simpleaffy
13.6 years ago boczniak767 ▴ 740
0
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4
replies
2.0k
views
Microarray query
simpleaffy simpleaffy
updated 14.0 years ago by ▴ 580 • written 14.0 years ago by ▴ 40
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1
reply
1.2k
views
(no subject)
simpleaffy simpleaffy
updated 14.0 years ago by ★ 13k • written 14.0 years ago by ▴ 40
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0
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1.3k
views
quality control of affy Chips for miRNA
miRNA cdf probe affy simpleaffy affyQCReport affycoretools arrayQualityMetrics miRNA cdf
14.1 years ago Assa Yeroslaviz ★ 1.5k
0
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1
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1.2k
views
quality control of affy Chips for miRNA
miRNA cdf affy simpleaffy affyQCReport affycoretools miRNA cdf affy simpleaffy
updated 14.1 years ago by 68k • written 14.1 years ago by ★ 1.5k
0
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3
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1.2k
views
Quality Control of Exon arrays using xps?
simpleaffy simpleaffy
updated 14.3 years ago by ★ 3.9k • written 14.3 years ago by ▴ 170
0
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0
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1.3k
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drosophila2cdf in simpleaffy / affyQCReport
cdf simpleaffy affyQCReport cdf simpleaffy affyQCReport
14.4 years ago Assa Yeroslaviz ★ 1.5k
0
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2
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1.7k
views
one problem about IRanges Package
simpleaffy IRanges simpleaffy IRanges
updated 14.4 years ago by 6.7k • written 14.4 years ago by ▴ 50
0
votes
0
replies
985
views
Simpleaffy problems
Annotation probe affy matchprobes simpleaffy AnnotationDbi Annotation probe affy
14.5 years ago James W. MacDonald 68k
0
votes
1
reply
945
views
problem in installing simpleaffy packeges
simpleaffy simpleaffy
updated 14.9 years ago by 25k • written 14.9 years ago by ▴ 20
0
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0
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1.1k
views
question regarding qc function in simpleaffy package
cdf affy simpleaffy cdf affy simpleaffy
15.0 years ago Groot, Philip de ▴ 630
0
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0
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2.0k
views
Error in getCdfInfo(object)
cdf simpleaffy cdf simpleaffy
15.0 years ago Arun A K ▴ 20
0
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0
replies
1.1k
views
question regarding qc function in simpleaffy package
cdf affy simpleaffy cdf affy simpleaffy
15.0 years ago James Anderson ▴ 820
0
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0
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913
views
question about QC and Simpleaffy package
simpleaffy simpleaffy
15.2 years ago James Anderson ▴ 820
0
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5
replies
1.9k
views
simpleAffy QC on HT_HG-U133_Plus_PM
cdf affy simpleaffy cdf affy simpleaffy
15.4 years ago Michael Walter ▴ 160
0
votes
1
reply
1.5k
views
Group samples on heatmap?
simpleaffy simpleaffy
updated 15.7 years ago by 68k • written 15.7 years ago by ▴ 220
0
votes
3
replies
1.5k
views
qc in simpleaffy
GO simpleaffy GO simpleaffy
16.0 years ago • updated 15.9 years ago Mayte Suarez-Farinas ▴ 510
0
votes
1
reply
1.7k
views
SimpeAffy: how to get/generate qcdef file?
cdf probe affy simpleaffy cdf probe affy simpleaffy
updated 16.2 years ago by ▴ 30 • written 16.2 years ago by ▴ 170
0
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0
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977
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SimpeAffy: how to get/generate qcdef file?
cdf simpleaffy cdf simpleaffy
16.2 years ago Renaud Gaujoux ▴ 170
0
votes
2
replies
1.5k
views
Problem with Annotation of Mouse4302.db in simpleaffy
Annotation mouse4302 simpleaffy GLAD Annotation mouse4302 simpleaffy GLAD
updated 16.2 years ago by 68k • written 16.2 years ago by ▴ 40
0
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0
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1.2k
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simpleaffy with hgu133plus2
hgu133plus2 simpleaffy hgu133plus2 simpleaffy
16.2 years ago dorothyc ▴ 140
0
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2
replies
1.3k
views
Simpleaffy: how are 3/5 ratios calculated
graph simpleaffy PROcess graph simpleaffy PROcess
updated 16.5 years ago by ▴ 320 • written 16.5 years ago by ▴ 50
0
votes
1
reply
966
views
Background values
Microarray gcrma simpleaffy Microarray gcrma simpleaffy
updated 16.6 years ago by ★ 13k • written 16.6 years ago by ▴ 160
0
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1
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1.4k
views
library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer cdf affy simpleaffy affyQCReport affyio arrayQualityMetrics Cancer cdf affy
updated 16.6 years ago by ★ 5.5k • written 16.7 years ago by ▴ 200
0
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0
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1.0k
views
simpleaffy pairwise.comparison problem
simpleaffy simpleaffy
16.7 years ago David Ruau ▴ 190
0
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12
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2.5k
views
Building BioC 2.2 with R 2.7.0
GO annaffy simpleaffy GO annaffy simpleaffy
updated 16.9 years ago by ▴ 630 • written 16.9 years ago by ▴ 160
0
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1
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1.0k
views
simpleAffy with bovine cdf
cdf simpleaffy cdf simpleaffy
17.0 years ago Paul Geeleher ★ 1.3k
50 results • Page 1 of 1
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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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