Bioconductor Significance

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deseq2 betaPrior shrinkage significance

6.8 years ago brynedal ▴ 40

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2.0k

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dna methylation illimina 450k methylation beta M significance

updated 7.4 years ago by James W. MacDonald 68k • written 7.4 years ago by skids121 • 0

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1.2k

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limma edger significance rnaseq

updated 7.9 years ago by Gordon Smyth 52k • written 7.9 years ago by roberto.spreafico ▴ 20

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1.6k

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salmon transcripts significance counts

8.6 years ago Assa Yeroslaviz ★ 1.5k

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2.9k

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deseq2 wald lrt genes significance

updated 8.6 years ago by Michael Love 43k • written 8.6 years ago by aziza ▴ 20

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1.0k

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cellcode significance

8.7 years ago christopher.clarskon15 ▴ 20

6 results • Page 1 of 1

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Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k

From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…

Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0

Thank you, I will try this and see.

Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexploitss • 0

Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…

Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status by Renuka • 0

how you did it pls explain

Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by James W. MacDonald 68k

If I understand correctly, you want to assess differential transcript abundances. If so, there are a couple of ways you can do that. One wa…

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A: Effect of lfcThreshold on p-value in DESeq2

Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet

What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?

Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =

Comment: Unused arguments error without used arguments in GSVA?

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Scholar to James W. MacDonald 68k