Bioconductor Significance

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deseq2 betaPrior shrinkage significance

6.9 years ago brynedal ▴ 40

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2.2k

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dna methylation illimina 450k methylation beta M significance

updated 7.5 years ago by James W. MacDonald 68k • written 7.5 years ago by skids121 • 0

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1.3k

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limma edger significance rnaseq

updated 8.1 years ago by Gordon Smyth 52k • written 8.1 years ago by roberto.spreafico ▴ 20

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1.6k

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salmon transcripts significance counts

8.7 years ago Assa Yeroslaviz ★ 1.5k

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3.0k

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deseq2 wald lrt genes significance

updated 8.8 years ago by Michael Love 43k • written 8.8 years ago by aziza ▴ 20

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1.0k

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cellcode significance

8.9 years ago christopher.clarskon15 ▴ 20

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Answer: fast apply on RleList by James W. MacDonald 68k

There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…

Answer: Custom CDF creation for HTA 2.0 array using GTF annotation by James W. MacDonald 68k

It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…

Comment: how to use `arrayWeightsQuick()`? by matthew • 0

In the specific use-case I have in mind, `expression` is a simple `matrix` of log2 gene expression per sample, no missing values.

Comment: BiocParallel_1.40.1.tar.gz not available by Johan • 0

It worked. Thanks :)

Comment: Model performance for spline modelling of RNA-seq timecourses in edgeR by skiaphrene ▴ 10

Dear Gordon, Thank you very much for your prompt reply. I agree with the limma/edgeR perspective of including all potentially explanatory…

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Answer: BiocParallel_1.40.1.tar.gz not available

Modelling gene program dynamics across time with {lemur}

A: DESeq2 one group vs multiple groups comparison in presence of batch effect

Comment: BiocParallel_1.40.1.tar.gz not available

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