Bioconductor Shiny

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722

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shiny EBImage

2.4 years ago Wolfgang Huber ★ 13k

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1.1k

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ChAMP shiny ChAMPdata

updated 2.8 years ago by anna.stanislawska • 0 • written 2.8 years ago by Mari • 0

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936

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BatchQC RNA-seq R Shiny batch-effect

4.7 years ago manninm • 0

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1.1k

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AnnotationHub Shiny Rstudio

updated 4.8 years ago by shepherl 4.1k • written 4.8 years ago by bwiley4 • 0

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1.5k

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iSEE shiny summarizedExperiment News

5.7 years ago Aaron Lun ★ 28k

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1.8k

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deseq2 shiny design rhandsontable hot_to_r()

updated 5.8 years ago by Michael Love 43k • written 5.8 years ago by hinkel2 • 0

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2.2k

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DEBrowser shiny

6.0 years ago tomasfly • 0

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1.7k

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rtracklayer browsegenome shiny

updated 6.2 years ago by Michael Lawrence ★ 11k • written 6.2 years ago by vivek82 • 0

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6.4k

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shiny package deploy

6.8 years ago • updated 6.7 years ago lloyd.izard ▴ 80

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1.6k

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SC3 single-cell shiny

updated 7.6 years ago by Vladimir Kiselev ▴ 150 • written 7.6 years ago by cfustero ▴ 20

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1.8k

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ChAMP Epigenetics plotly Shiny GUI News

8.1 years ago • updated 7.9 years ago Yuan Tian ▴ 90

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1.3k

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shiny

updated 8.1 years ago by Martin Morgan 25k • written 8.1 years ago by bhakti.dwivedi • 0

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1.5k

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cellcode shiny heatmap

updated 8.7 years ago by Andrzej Oleś ▴ 750 • written 8.7 years ago by christopher.clarskon15 ▴ 20

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1.8k

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limmagui shiny

8.7 years ago christopher.clarskon15 ▴ 20

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annotation genomicranges visualization docker shiny Tutorial

8.8 years ago Vincent J. Carey, Jr. 6.7k

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1.9k

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R validate shiny

9.2 years ago alptaciroglu ▴ 50

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3.0k

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shiny network interactions

10.1 years ago pshannon ▴ 100

17 results • Page 1 of 1

Recent ...

Replies

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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