Bioconductor Shiny

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shiny EBImage

2.8 years ago Wolfgang Huber ★ 13k

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1.2k

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ChAMP shiny ChAMPdata

updated 3.1 years ago by anna.stanislawska • 0 • written 3.1 years ago by Mari • 0

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BatchQC RNA-seq R Shiny batch-effect

5.0 years ago manninm • 0

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AnnotationHub Shiny Rstudio

updated 5.1 years ago by shepherl 4.1k • written 5.2 years ago by bwiley4 • 0

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iSEE shiny summarizedExperiment News

6.1 years ago Aaron Lun ★ 28k

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1.9k

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deseq2 shiny design rhandsontable hot_to_r()

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by hinkel2 • 0

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DEBrowser shiny

6.3 years ago tomasfly • 0

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rtracklayer browsegenome shiny

updated 6.5 years ago by Michael Lawrence ★ 11k • written 6.5 years ago by vivek82 • 0

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shiny package deploy

7.1 years ago lloyd.izard ▴ 80

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1.6k

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SC3 single-cell shiny

updated 8.0 years ago by Vladimir Kiselev ▴ 150 • written 8.0 years ago by cfustero ▴ 20

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1.9k

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ChAMP Epigenetics plotly Shiny GUI News

8.5 years ago • updated 8.3 years ago Yuan Tian ▴ 90

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1.4k

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shiny

updated 8.5 years ago by Martin Morgan 25k • written 8.5 years ago by bhakti.dwivedi • 0

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cellcode shiny heatmap

updated 9.0 years ago by Andrzej Oleś ▴ 750 • written 9.0 years ago by christopher.clarskon15 ▴ 20

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limmagui shiny

9.1 years ago christopher.clarskon15 ▴ 20

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annotation genomicranges visualization docker shiny Tutorial

9.1 years ago Vincent J. Carey, Jr. 6.7k

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R validate shiny

9.5 years ago alptaciroglu ▴ 50

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shiny network interactions

10.5 years ago pshannon ▴ 100

17 results • Page 1 of 1

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Comment: Differing results with DESeq2 by JKim • 0

My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…

Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k

This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…

Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80

Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…

Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0

That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…

Votes

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

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