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shiny
•
reset
0
votes
0
replies
696
views
Displaying large image stacks (e.g. from multiplexed immunohistochemistry) using shiny and EBImage
shiny
EBImage
2.3 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
1.0k
views
Error in ChAMP GUI
ChAMP
shiny
ChAMPdata
updated 2.6 years ago by
anna.stanislawska
• 0 • written 2.7 years ago by
Mari
• 0
0
votes
0
replies
912
views
Export Results from BatchQC Shiny App
BatchQC
RNA-seq
R
Shiny
batch-effect
4.6 years ago
manninm
• 0
0
votes
1
reply
1.1k
views
AnnotationHub display() gives JavaScript Alert and DataTables warning
AnnotationHub
Shiny
Rstudio
updated 4.7 years ago by
shepherl
4.1k • written 4.7 years ago by
bwiley4
• 0
6
votes
0
replies
1.4k
views
News:
Winners of the 1st Shiny Contest: iSEE
iSEE
shiny
summarizedExperiment
News
5.6 years ago
Aaron Lun
★ 28k
0
votes
7
replies
1.7k
views
Problems with DESeq2 'design' parameter using Shiny/rhandsontable
deseq2
shiny
design
rhandsontable
hot_to_r()
updated 5.7 years ago by
Michael Love
42k • written 5.7 years ago by
hinkel2
• 0
0
votes
1
reply
2.1k
views
DEBrowser shiny - Maximum upload size exceeded - error
DEBrowser
shiny
5.8 years ago
tomasfly
• 0
0
votes
3
replies
1.6k
views
browseGenome with Shiny
rtracklayer
browsegenome
shiny
updated 6.1 years ago by
Michael Lawrence
★ 11k • written 6.1 years ago by
vivek82
• 0
12
votes
3
replies
6.4k
views
Error while uploading Bioconductor packages - R Shiny
shiny
package
deploy
6.6 years ago
lloyd.izard
▴ 80
3
votes
3
replies
1.5k
views
Sharing SC3_interactive results
SC3
single-cell
shiny
updated 7.5 years ago by
Vladimir Kiselev
▴ 150 • written 7.5 years ago by
cfustero
▴ 20
0
votes
1
reply
1.8k
views
News:
Plotly uprading issue in ChAMP package
ChAMP
Epigenetics
plotly
Shiny
GUI
News
8.0 years ago • updated 7.8 years ago
Yuan Tian
▴ 90
0
votes
1
reply
1.3k
views
R packages developed using shiny
shiny
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
bhakti.dwivedi
• 0
1
vote
1
reply
1.5k
views
reactive CellCODE heatmap
cellcode
shiny
heatmap
updated 8.5 years ago by
Andrzej Oleś
▴ 750 • written 8.5 years ago by
christopher.clarskon15
▴ 20
0
votes
1
reply
1.7k
views
shiny account on mac not deploying server
limmagui
shiny
8.6 years ago
christopher.clarskon15
▴ 20
7
votes
0
replies
3.9k
views
Tutorial:
New edX "Data analysis for Life Sciences" module: High performance computing for reproducible genomics
annotation
genomicranges
visualization
docker
shiny
Tutorial
8.7 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
1.9k
views
Shiny - error messages with validate
R
validate
shiny
9.1 years ago
alptaciroglu
▴ 50
1
vote
7
replies
3.0k
views
Shiny app for RefNet, PSICQUIC: annotated protein/protein interactions
shiny
network
interactions
10.0 years ago
pshannon
▴ 100
17 results • Page
1 of 1
Recent ...
Replies
Comment: Differential Expression Analysis with unbalanced batches without replication bet
by
Thili
• 0
Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…
Comment: Problem at champ.load
by
andrew.gibbons
• 0
I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…
Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column
by
GV Yoshikawa
• 0
Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…
Answer: Differential Expression Analysis with unbalanced batches without replication bet
by
Gordon Smyth
51k
> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected.
by
Adam
• 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
Awards
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Teacher
to
Gordon Smyth
51k
Popular Question
to
Guido Hooiveld
★ 4.1k
Popular Question
to
shepherl
4.1k
Supporter
to
Paul Harrison
▴ 100
Popular Question
to
Mikhail Dozmorov
▴ 30
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