Bioconductor Sequence

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conservation sequence genomicalignments

6.7 years ago martin.busch • 0

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sequence bsgenome

updated 7.7 years ago by Martin Morgan 25k • written 7.7 years ago by nicola.romano ▴ 10

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2.8k

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R Biostrings sequence

updated 8.1 years ago by Mike Smith ★ 6.6k • written 8.1 years ago by aspenaure • 0

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1.7k

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biostrings iranges sequence alignment protein

updated 8.2 years ago by Michael Lawrence ★ 11k • written 8.2 years ago by Assa Yeroslaviz ★ 1.5k

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2.3k

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sequence annotationhub biostrings

updated 9.7 years ago by Hervé Pagès 16k • written 9.7 years ago by antje.janosch • 0

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1.7k

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ABI sequence DNA melting curve

updated 9.9 years ago by Hervé Pagès 16k • written 9.9 years ago by Prasanth ▴ 20

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1.9k

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sequence alignment biostrings

updated 10.4 years ago by Hervé Pagès 16k • written 10.4 years ago by ben.ward ▴ 30

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2.1k

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ab1 sequence sangerseqR

updated 10.4 years ago by aaron.l.statham ▴ 10 • written 10.4 years ago by anuragm • 0

8 results • Page 1 of 1

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Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0

There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…

Comment: Differing results with DESeq2 by JKim • 0

My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…

Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k

This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…

Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80

Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…

Votes

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

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Autobiographer to Paul Harrison ▴ 100

Popular Question to mohammedtoufiq91 ▴ 10