Bioconductor Seqlevels

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granges seqlevels feature request

updated 2.7 years ago by story.benjamin ▴ 20 • written 7.7 years ago by Charles Plessy ▴ 180

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1.7k

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txdb.hsapiens.ucsc.hg19.knowngene seqlevels bugs

updated 8.1 years ago by Hervé Pagès 16k • written 8.1 years ago by wcstcyx ▴ 30

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1.6k

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txdb threeutrsbytranscript seqlevelsstyle seqlevels

9.3 years ago Robert K. Bradley ▴ 40

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8.1k

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granges seqlevels

9.8 years ago Hermann Norpois ▴ 170

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2.0k

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variantannotation seqlevels error

updated 10.4 years ago by Valerie Obenchain ★ 6.8k • written 10.4 years ago by Asma rabe ▴ 290

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Answer: Unable to find sample sheet file for ChAMP methylation data analysis by James W. MacDonald 67k

There is an example file in the extdata directory of the `minfiData` package that you could emulate.

Comment: Rain error: invalid annotation of time points by Dominik • 0

Hi, I kept running into the same issue until I double checked their help and understood, that columns and rows have to be designed in anoth…

Answer: How to generate circular cnetplot and color nodes and edges in the same plot ? by Guido Hooiveld ★ 4.1k

Since the release of `enrichplot` of October 2024, the code of the function `cnetplot` has been completely rewritten by Guangchuang in orde…

Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mec25 • 0

I am unable to find the math behind the dba.normalize(), for instance when the E-coli fraction is used is the signal mutliplied by the fact…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

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