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seqinr
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Seqinr for FASTQ files?
fastq
fast
seqinr
updated 3.1 years ago by
ATpoint
★ 4.8k • written 3.1 years ago by
hank00000
• 0
0
votes
0
replies
1.4k
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Match peptide within protein sequence fasta and extract position information based on protein sequence
R
seqinr
biostrings
6.6 years ago
rabalski
• 0
0
votes
1
reply
946
views
SeqinR socketConnection error help?
seqinr
updated 6.7 years ago by
Martin Morgan
25k • written 6.7 years ago by
daviqd.halvorsen
• 0
0
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0
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1.2k
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Sequencing database tool in R: tracking Sanger and NGS of large-scale directed evolution projects
rmysql
fastq
seqinr
ngs
sangerseqr
7.0 years ago
JoeMG
• 0
2
votes
1
reply
5.4k
views
Reading fasta file with multiple sequences
multiple sequences
bioconductor
rstudio
seqinr
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
Riot
• 0
1
vote
1
reply
1.4k
views
Given a multifasta file and for each sequence, shuffle middle part of the sequence leaving the flanks intact and the opposite
shuffle
regioner
seqinr
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
Dimitris Polychronopoulos
▴ 80
1
vote
7
replies
3.7k
views
seqinr package - choosebank() function not connecting
seqinr
choose bank
error message
updated 9.1 years ago by
Martin Morgan
25k • written 9.1 years ago by
jayanthisahithi
▴ 10
4
votes
3
replies
4.3k
views
a package for read.fasta
seqinr
fasta
updated 9.7 years ago by
Hervé Pagès
16k • written 9.7 years ago by
Angel
▴ 40
8 results • Page
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Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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