Bioconductor Seqinr

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1.3k

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fastq fast seqinr

updated 2.9 years ago by ATpoint ★ 4.7k • written 2.9 years ago by hank00000 • 0

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1.3k

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R seqinr biostrings

6.4 years ago rabalski • 0

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914

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seqinr

updated 6.5 years ago by Martin Morgan 25k • written 6.5 years ago by daviqd.halvorsen • 0

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1.1k

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rmysql fastq seqinr ngs sangerseqr

6.8 years ago JoeMG • 0

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5.2k

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multiple sequences bioconductor rstudio seqinr

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by Riot • 0

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1.4k

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shuffle regioner seqinr

updated 8.2 years ago by Martin Morgan 25k • written 8.2 years ago by Dimitris Polychronopoulos ▴ 80

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3.6k

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seqinr choose bank error message

updated 8.9 years ago by Martin Morgan 25k • written 8.9 years ago by jayanthisahithi ▴ 10

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4.2k

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seqinr fasta

updated 9.5 years ago by Hervé Pagès 16k • written 9.5 years ago by Angel ▴ 40

8 results • Page 1 of 1

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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k

> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…

Answer: Automatically install dependencies by ATpoint ★ 4.7k

The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…

Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k

> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…

Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k

This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k

Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…

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A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo

Comment: Weird p-values using DESeq2?

Comment: Overcoming confounding in batch effect correction

Answer: Store Matrix in DataFrame Cell

Answer: enrichGOgradient color change

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Popular Question to maltethodberg ▴ 180