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segmentation
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Prepare data frame of 3 column-lists or matrix of three-column lists from VCF or BAM files
BAM
Segmentation
CINdex
VCF
Data
2.7 years ago
raven1306
• 0
0
votes
1
reply
1.1k
views
PureCN: Why is average coverage used for segmentation and not the denoised fragment counts?
PureCN
CNV
CNA
segmentation
calculateTangentNormal
updated 5.3 years ago by
markus.riester
▴ 130 • written 5.3 years ago by
sruddy17
• 0
0
votes
0
replies
1.0k
views
Reference for minimum number of probes commonly used for segmentation of microarray data
segmentation
reference
CNA
TCGA
6.2 years ago
jlarsen728
• 0
1
vote
5
replies
1.5k
views
CRImage createTrainingSet package is not available to install
classification
segmentation
cell types
image analysis
crimage
6.7 years ago
Jenny.chien
• 0
0
votes
3
replies
1.9k
views
Analysing TCGA Level 3 Copy Number Data Location of markers in the genome
TCGA
Cancer
dnacopy
segmentation
updated 7.8 years ago by
markus.riester
▴ 130 • written 7.8 years ago by
Luisa672
• 0
1
vote
2
replies
1.6k
views
DNAcopy segmentation issue: min.width argument not working?
dnacopy
segmentation
CBS
updated 8.2 years ago by
Venkat Seshan
▴ 30 • written 8.2 years ago by
W. C.
▴ 10
0
votes
2
replies
1.4k
views
GCRMA segmentation fault
gcrma
segmentation
fault
segfault
updated 9.0 years ago by
James W. MacDonald
68k • written 9.0 years ago by
kazi
• 0
7 results • Page
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Answer: Version conflict when pushing to scQTLtools devel branch
by
shepherl
4.1k
There is a Bioconductor release today. There were notifications on the bioc-devel mailing list https://stat.ethz.ch/pipermail/bioc-devel…
Comment: DiffBind can't find a DAR
by
Mengjun
• 0
The details about this question: I have 4 samples with 2 conditions( ctrl_1, ctrl_2, ko_1, ko_2), i use these 4 samples as input. Here is …
Comment: DiffBind can't find a DAR
by
Mengjun
• 0
Thank you very much for pointing out this shortcoming. I will improve it.
Comment: samtools loading in R
by
Charlie
• 0
This is obviously a very late answer but I had a similar error: > sh: samtools: command not found > > sh: samtools: command not found > …
Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label
by
njmcdirect
• 0
https://www.www-njmcdirect.run/
Votes
Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
Answer: GSVA ssGSEA vs. Broad implementation of ssGSEA
GSVA ssGSEA vs. Broad implementation of ssGSEA
Comment: biomaRt server error, and mirrors do not help
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