Showing : ruv • reset
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Problem with spike-ins (ERCC) in DESeq2 analysis after doing RUVg!
SpikeIn RUVSeq DESeq2 RUV
updated 8 months ago by 43k • written 9 months ago by • 0
1
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2
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1.9k
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RUV4 for microarrays
RUV4 RUV Microarray
3.9 years ago Antonio • 0
5
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6
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2.1k
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RUVseq to remove a library size artefact in a zebrafish brain RNA-seq dataset
RUVSeq RUV RNA-seq
updated 4.5 years ago by 68k • written 4.5 years ago by ▴ 20
0
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1
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2.1k
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Application of RUV to a small Nanostring dataset
RUV Nanostring RUV-III
updated 4.9 years ago by ▴ 20 • written 5.7 years ago by ▴ 30
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3
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1.4k
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Highly variable gene analysis including RUVs batch correction
deseq2 RUV batch highly variable genes
updated 5.1 years ago by • 0 • written 5.1 years ago by • 0
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1
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1.5k
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Using RUVs on Deseq2 but clustering still seems wrong
deseq2 ruv batch
updated 5.5 years ago by 43k • written 5.5 years ago by • 0
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0
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1.1k
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missMethyl EPIC manifest update
missmethyl epic illuminahumanmethylationepicanno.ilm10b4.hg19. ruv
6.6 years ago peter.fransquet • 0
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1.2k
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which value from ruvadj in missMethyl can present methylation status
methylation missmethyl RUV batch effect
6.9 years ago RC • 0
0
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0
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1.2k
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MissMethyl: Sample size and control probes
missmethyl RUV control probes
6.9 years ago Taub, Margaret ▴ 10
2
votes
9
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3.1k
views
Zero inflation in RUV normalization and DE for single cell data
ruv ruvseq ruvnormalize single-cell zero-inflated
updated 7.7 years ago by ▴ 980 • written 7.7 years ago by ▴ 90
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3
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2.9k
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Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV ruvseq ruvr ruvnormalize single cell
7.7 years ago Nik Tuzov ▴ 90
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1.1k
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Differential expressed genes between different samples in RUVseq
rnaseq ruv differential gene expression R
7.8 years ago manish20072013 • 0
3
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4
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3.6k
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Single cells batch effects
RUV single cell batch effect
8.0 years ago ribioinfo ▴ 100
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0
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1.2k
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Has anyone used the RUV package for Microbiome data?
ruv
8.1 years ago sasha • 0
0
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1
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2.7k
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Can FPKM or TPM values be used as RUVs input ?
ruvseq ruvg ruv
updated 8.2 years ago by ▴ 980 • written 8.3 years ago by • 0
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0
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1.3k
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Bach effect and PEER/RUV correction on large population
methylation gene expression sva batch effect ruv
8.3 years ago carleshf ▴ 10
2
votes
1
reply
1.9k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq RUV ruvnormalize ruvg
8.7 years ago anthonycolombo60 • 0
0
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5
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2.7k
views
RUVseq for microRNAs
ruvseq ruv microrna
9.7 years ago sergio.espeso-gil • 0
0
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1
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1.9k
views
normalised data after RUV2( )
ruv microarray
updated 9.7 years ago by ▴ 30 • written 9.9 years ago by ▴ 160
3
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2
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3.0k
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Normalisation before RUVg and RUV2?
ruvseq ruv
updated 9.9 years ago by ▴ 980 • written 9.9 years ago by ▴ 160
1
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9
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3.3k
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RUV: removing unwanted variation in RNA-seq
RUV ruvseq rnaseq
9.9 years ago sergio.espeso-gil • 0
21 results • Page 1 of 1
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Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Comment: Question on displaying color photo as Greyscale in EBImage by Albert • 0
great and very nice
Comment: European Bioconductor Conference 2023 planning by Pandora • 0
The [Tag Game][1] is not just a simple chase; it involves strategy and tactics as players must think quickly to avoid being tagged. Various…
Comment: Generalized edgeR functions by bukarimanches • 0
I have estimated the new parameter set, it doesn't seem as useful as I thought [geometry dash lite][1] [1]: https://geometry-lite.com/
Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by Morse • 0
[Geometry Dash Lite][1] is the free version of the famous Geometry Dash series. It was made by RobTop Games and lets players enjoy the thri…
Votes
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
what the test method for enrichGO in clusterProfiler?
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