Showing : ruv • reset
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Problem with spike-ins (ERCC) in DESeq2 analysis after doing RUVg!
SpikeIn RUVSeq DESeq2 RUV
updated 6 months ago by 43k • written 6 months ago by • 0
1
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2
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1.8k
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RUV4 for microarrays
RUV4 RUV Microarray
3.7 years ago Antonio • 0
5
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6
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2.0k
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RUVseq to remove a library size artefact in a zebrafish brain RNA-seq dataset
RUVSeq RUV RNA-seq
updated 4.3 years ago by 67k • written 4.3 years ago by ▴ 20
0
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1
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1.9k
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Application of RUV to a small Nanostring dataset
RUV Nanostring RUV-III
updated 4.8 years ago by ▴ 20 • written 5.5 years ago by ▴ 30
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3
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1.3k
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Highly variable gene analysis including RUVs batch correction
deseq2 RUV batch highly variable genes
updated 4.9 years ago by • 0 • written 4.9 years ago by • 0
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1
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1.4k
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Using RUVs on Deseq2 but clustering still seems wrong
deseq2 ruv batch
updated 5.3 years ago by 43k • written 5.3 years ago by • 0
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0
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1.1k
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missMethyl EPIC manifest update
missmethyl epic illuminahumanmethylationepicanno.ilm10b4.hg19. ruv
6.4 years ago peter.fransquet • 0
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1.1k
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which value from ruvadj in missMethyl can present methylation status
methylation missmethyl RUV batch effect
6.7 years ago RC • 0
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0
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1.1k
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MissMethyl: Sample size and control probes
missmethyl RUV control probes
6.7 years ago Taub, Margaret ▴ 10
2
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9
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3.0k
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Zero inflation in RUV normalization and DE for single cell data
ruv ruvseq ruvnormalize single-cell zero-inflated
updated 7.5 years ago by ▴ 980 • written 7.5 years ago by ▴ 90
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3
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2.7k
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Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV ruvseq ruvr ruvnormalize single cell
7.5 years ago Nik Tuzov ▴ 90
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Differential expressed genes between different samples in RUVseq
rnaseq ruv differential gene expression R
7.6 years ago manish20072013 • 0
3
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4
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3.5k
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Single cells batch effects
RUV single cell batch effect
7.8 years ago ribioinfo ▴ 100
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1.2k
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Has anyone used the RUV package for Microbiome data?
ruv
7.9 years ago sasha • 0
0
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2.6k
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Can FPKM or TPM values be used as RUVs input ?
ruvseq ruvg ruv
updated 8.0 years ago by ▴ 980 • written 8.1 years ago by • 0
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0
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1.2k
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Bach effect and PEER/RUV correction on large population
methylation gene expression sva batch effect ruv
8.1 years ago carleshf ▴ 10
2
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1
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1.8k
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RUVSeq empirical negative controls? how many to take to find the span set
ruvseq RUV ruvnormalize ruvg
8.5 years ago anthonycolombo60 • 0
0
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5
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2.6k
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RUVseq for microRNAs
ruvseq ruv microrna
9.5 years ago sergio.espeso-gil • 0
0
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1.8k
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normalised data after RUV2( )
ruv microarray
updated 9.5 years ago by ▴ 30 • written 9.7 years ago by ▴ 160
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2
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2.9k
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Normalisation before RUVg and RUV2?
ruvseq ruv
updated 9.7 years ago by ▴ 980 • written 9.7 years ago by ▴ 160
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9
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3.1k
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RUV: removing unwanted variation in RNA-seq
RUV ruvseq rnaseq
9.7 years ago sergio.espeso-gil • 0
21 results • Page 1 of 1
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Answer: Unable to find sample sheet file for ChAMP methylation data analysis by James W. MacDonald 67k
There is an example file in the extdata directory of the `minfiData` package that you could emulate.
Comment: Rain error: invalid annotation of time points by Dominik • 0
Hi, I kept running into the same issue until I double checked their help and understood, that columns and rows have to be designed in anoth…
Answer: How to generate circular cnetplot and color nodes and edges in the same plot ? by Guido Hooiveld ★ 4.1k
Since the release of `enrichplot` of October 2024, the code of the function `cnetplot` has been completely rewritten by Guangchuang in orde…
Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mec25 • 0
I am unable to find the math behind the dba.normalize(), for instance when the E-coli fraction is used is the signal mutliplied by the fact…
Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10
Thank you so much for taking time to provide this clarification!
Votes
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