Bioconductor Ruv

Showing : ruv • reset

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608

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SpikeIn RUVSeq DESeq2 RUV

updated 7 months ago by Michael Love 43k • written 7 months ago by Ειρήνη • 0

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1.9k

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RUV4 RUV Microarray

3.8 years ago Antonio • 0

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2.0k

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RUVSeq RUV RNA-seq

updated 4.4 years ago by James W. MacDonald 68k • written 4.4 years ago by karissa.barthelson ▴ 20

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2.0k

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RUV Nanostring RUV-III

updated 4.8 years ago by hermidalc ▴ 20 • written 5.6 years ago by raf4 ▴ 30

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1.3k

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deseq2 RUV batch highly variable genes

updated 5.0 years ago by tmms • 0 • written 5.0 years ago by f_pardow • 0

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1.4k

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deseq2 ruv batch

updated 5.4 years ago by Michael Love 43k • written 5.4 years ago by r.tom • 0

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1.1k

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missmethyl epic illuminahumanmethylationepicanno.ilm10b4.hg19. ruv

6.5 years ago peter.fransquet • 0

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1.1k

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methylation missmethyl RUV batch effect

6.8 years ago RC • 0

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1.2k

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missmethyl RUV control probes

6.8 years ago Taub, Margaret ▴ 10

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3.0k

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ruv ruvseq ruvnormalize single-cell zero-inflated

updated 7.5 years ago by davide risso ▴ 980 • written 7.6 years ago by Nik Tuzov ▴ 90

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2.8k

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RUV ruvseq ruvr ruvnormalize single cell

7.6 years ago Nik Tuzov ▴ 90

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1.1k

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rnaseq ruv differential gene expression R

7.7 years ago manish20072013 • 0

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3.5k

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RUV single cell batch effect

7.9 years ago ribioinfo ▴ 100

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1.2k

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ruv

8.0 years ago sasha • 0

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2.6k

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ruvseq ruvg ruv

updated 8.1 years ago by davide risso ▴ 980 • written 8.2 years ago by weiwsmiling • 0

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1.3k

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methylation gene expression sva batch effect ruv

8.2 years ago carleshf ▴ 10

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1.9k

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ruvseq RUV ruvnormalize ruvg

8.6 years ago anthonycolombo60 • 0

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2.6k

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ruvseq ruv microrna

9.6 years ago • updated 9.5 years ago sergio.espeso-gil • 0

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1.9k

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ruv microarray

updated 9.6 years ago by gthm ▴ 30 • written 9.8 years ago by Pauly Lin ▴ 160

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2.9k

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ruvseq ruv

updated 9.8 years ago by davide risso ▴ 980 • written 9.8 years ago by Pauly Lin ▴ 160

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3.1k

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RUV ruvseq rnaseq

9.8 years ago sergio.espeso-gil • 0

21 results • Page 1 of 1

Recent ...

Replies

Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840

Dear Gordon, thanks a million for your reply (just saw it, did not get any notification through email) !! Regarding the log2 transformation…

Answer: cameraPR() non directional test by Gordon Smyth 52k

Yes, you can still do non-directional tests using cameraPR(), but it's not quite as easy as it was using the original camera() function as …

Answer: WGCNA with paired samples by Ivo • 0

You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …

Answer: Plot title for PCA in DESeq2 by ATpoint ★ 4.7k

The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.

Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Votes

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: Plot title for PCA in DESeq2

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