Showing : rnaseqpower • reset
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Are unequal sample sizes in differential gene expression (DGE) analysis a problem for edgeR, DESeq2, and NOISeq? Could you give me some advice on how…
RNA RNASeqPower DEGseq
written 5 months ago by • 0
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featureCounts fails to load annotation file
featurecounts rnas RNASeqPower
6 months ago yasmin.hilliam ▴ 10
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Batch adjustment for cohort based RNA seq data
RNASeqPower removeBatchEffect cpm Batcheffect
7 months ago sukeshinik5 ▴ 20
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RNASeq time course analysis, missing time points for control
RNASeqData RnaSeqSampleSize RNASeq RNASeqPower
17 months ago drewhaydensteele • 0
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Comparing RNASeq data from multiple studies
RNASeqData RnaSeqSampleSize RNASeqPower RNASeq
updated 19 months ago by ▴ 780 • written 19 months ago by • 0
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Is it okay to increase filtering to get more significant Adjusted P Values for DEGs found using Limma?
RNASeqPower edgeR DifferentialExpression limma RNASeq
updated 24 months ago by 52k • written 2.0 years ago by • 0
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Typo in citation for RNASeqPower
RNASeqPower citation
2.9 years ago stephenjjohnson • 0
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How to calculate coefficient of variation within group?
edgeR limma RNASeqPower
updated 3.2 years ago by 52k • written 4.2 years ago by ▴ 60
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getting sample size for RNAseq experiment
rnaseqpower sspa sample size sequencing complex-design
updated 9.2 years ago by ▴ 20 • written 9.2 years ago by • 0
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Depth or # of reads for RNASeqPower
rnaseqpower
10.5 years ago drnknmstrr • 0
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Power Calculation of multiple factors design of RNA-sequencing study
edgeR DESeq RNASeqPower edgeR DESeq RNASeqPower
11.2 years ago Guest User ★ 13k
11 results • Page 1 of 1
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Comment: Unable to install a forged BSgenome package by James W. MacDonald 68k
R doesn't like the name of your package. I would bet that it's the minus sign, so maybe remove that from the name of the package and from t…
Comment: Unable to install a forged BSgenome package by JABEZ RAJU • 0
install.packages("E:/PhD data/RNAseq/TSS/BSgenome.Hnudivirus-2.NCBI.ViralProj14215", repos = NULL, type = "source") Installing package into…
Comment: DESeq2 with proteomics data by wook2014 • 0
You may need to do NA imputation before give the data to DEseq2 and there are study on DEseq2 performance on proteomics data, like :https:/…
Answer: Unable to install a forged BSgenome package by James W. MacDonald 68k
Add a repos = NULL to `install.packages`. You may also need to either move the file to a dir that doesn't have a space in the name or you […
Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an by James W. MacDonald 68k
Have you figured out how to do this using tidy grammar? Using non-tidy grammar is quite simple, and perhaps you already know how to do that…
Votes
Answer: Unable to install a forged BSgenome package
Answer: How to combine two DESeq2 objects (dds) for analysis
How to combine two DESeq2 objects (dds) for analysis
How can I correctly use phyloseq with Docker?
A: DESeq2::sizeFactors() function does not output the sizeFactor table.
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