Showing : rnaseqpower • reset
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Are unequal sample sizes in differential gene expression (DGE) analysis a problem for edgeR, DESeq2, and NOISeq? Could you give me some advice on how…
RNA RNASeqPower DEGseq
written 4 months ago by • 0
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featureCounts fails to load annotation file
featurecounts rnas RNASeqPower
6 months ago • updated 5 months ago yasmin.hilliam ▴ 10
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Batch adjustment for cohort based RNA seq data
RNASeqPower removeBatchEffect cpm Batcheffect
6 months ago sukeshinik5 ▴ 20
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RNASeq time course analysis, missing time points for control
RNASeqData RnaSeqSampleSize RNASeq RNASeqPower
16 months ago drewhaydensteele • 0
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Comparing RNASeq data from multiple studies
RNASeqData RnaSeqSampleSize RNASeqPower RNASeq
updated 18 months ago by ▴ 780 • written 18 months ago by • 0
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Is it okay to increase filtering to get more significant Adjusted P Values for DEGs found using Limma?
RNASeqPower edgeR DifferentialExpression limma RNASeq
updated 23 months ago by 52k • written 23 months ago by • 0
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Typo in citation for RNASeqPower
RNASeqPower citation
2.8 years ago stephenjjohnson • 0
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How to calculate coefficient of variation within group?
edgeR limma RNASeqPower
updated 3.1 years ago by 52k • written 4.1 years ago by ▴ 60
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getting sample size for RNAseq experiment
rnaseqpower sspa sample size sequencing complex-design
updated 9.1 years ago by ▴ 20 • written 9.2 years ago by • 0
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Depth or # of reads for RNASeqPower
rnaseqpower
10.5 years ago drnknmstrr • 0
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Power Calculation of multiple factors design of RNA-sequencing study
edgeR DESeq RNASeqPower edgeR DESeq RNASeqPower
11.1 years ago Guest User ★ 13k
11 results • Page 1 of 1
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Comment: Differential expression analysis using two TCGA datasets by ATpoint ★ 4.8k
If these are two different batches then they're fully confounded making it statistically invalid. Biologically, I find it at least question…
Comment: PhD scholar by ATpoint ★ 4.8k
Hi, please consider asking this at biostars.org as here we're mainly answering precise technical questions towards the packages. You are se…
Answer: how to use `arrayWeightsQuick()`? by Gordon Smyth 52k
Yes, that is the correct way to use `arrayWeightsQuick`. Thanks for pointing out that there is still a reference to `arrayWeightsSimple` i…
Answer: fast apply on RleList by story.benjamin ▴ 20
solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…
Comment: fast apply on RleList by story.benjamin ▴ 20
Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…
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Having Trouble Using CNE12() and CNE21() in CNEr
Answer: Having Trouble Using CNE12() and CNE21() in CNEr
annotation EpicV2
Answer: fast apply on RleList
Answer: BiocParallel_1.40.1.tar.gz not available
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