Bioconductor Rnaseqpower

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RNA RNASeqPower DEGseq

written 9 weeks ago by Jonathan • 0

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634

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featurecounts rnas RNASeqPower

3 months ago yasmin.hilliam ▴ 10

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379

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RNASeqPower removeBatchEffect cpm Batcheffect

3 months ago sukeshinik5 ▴ 20

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810

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RNASeqData RnaSeqSampleSize RNASeq RNASeqPower

13 months ago drewhaydensteele • 0

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704

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RNASeqData RnaSeqSampleSize RNASeqPower RNASeq

updated 15 months ago by Basti ▴ 780 • written 16 months ago by Luke • 0

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RNASeqPower edgeR DifferentialExpression limma RNASeq

updated 20 months ago by Gordon Smyth 52k • written 20 months ago by Sara • 0

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653

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RNASeqPower citation

2.6 years ago stephenjjohnson • 0

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edgeR limma RNASeqPower

updated 2.9 years ago by Gordon Smyth 52k • written 3.9 years ago by Ahdee ▴ 50

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2.6k

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rnaseqpower sspa sample size sequencing complex-design

updated 8.9 years ago by m.van_iterson ▴ 20 • written 8.9 years ago by roser.navarro • 0

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1.3k

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rnaseqpower

10.3 years ago drnknmstrr • 0

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1.2k

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edgeR DESeq RNASeqPower edgeR DESeq RNASeqPower

10.9 years ago Guest User ★ 13k

11 results • Page 1 of 1

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Answer: Error compiling Rbowtie2 in R-4.4 (Bioconductor 3.20 and probably 3.19) by ja.garcia • 0

It has been fixed by the Rbowtie2 maintainers in version 2.12.2. Thank you for the quick fix!

Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by Amora • 0

You did a great job giving an overview.....[slope][1] better than the bioconductor group! [1]: https://slopeio.org

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…

Answer: SingleCellExperiment convenience function for metadata+expression? by Peter Hickey ▴ 750

Hi Sarah, `scuttle::makePerCellDF()` / `scuttle::makePerFeatureDF()` and `scater::ggcells()` / `scater::ggfeatures()`, which build upon th…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by QN ▴ 10

Thank you ATpoint for your response! In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…

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Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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