Bioconductor Resultsnames

Showing : resultsnames • reset

vote

replies

1.4k

views

DESeq2 resultsNames lfcShrink

updated 2.4 years ago by ATpoint ★ 4.6k • written 2.4 years ago by eve.olszanowski • 0

votes

replies

2.4k

views

resultsNames DESeq2 coefficient

3.8 years ago Jane ▴ 10

votes

replies

867

views

resultsNames DESeq2

written 4.0 years ago by efratsh ▴ 10

votes

replies

1.1k

views

pairwise deseq2 extracting contrasts resultsnames results deseq2

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by Ricardo Rodrigues • 0

votes

replies

1.3k

views

deseq2 resultsnames batch effect contrast

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by pkachroo ▴ 10

vote

replies

10k

views

deseq2 DESeq2 resultsNames

7.5 years ago davichen ▴ 10

votes

1.4k

views

deseq2 resultsnames

updated 7.5 years ago by Michael Love 43k • written 7.5 years ago by mrigaya.mehra ▴ 10

votes

replies

3.7k

views

deseq2 rnaseq resultsnames

7.7 years ago zeynep.nenseth • 0

votes

replies

4.4k

views

DESeq deseq2 resultsnames

8.6 years ago • updated 8.5 years ago akaever ▴ 30

votes

replies

2.5k

views

deseq2 resultsnames multifactorial design

updated 8.7 years ago by Michael Love 43k • written 8.7 years ago by Ira ▴ 10

votes

3.2k

views

deseq2 relevel resultsNames multifactorial design

updated 8.9 years ago by Michael Love 43k • written 8.9 years ago by rclaire ▴ 20

11 results • Page 1 of 1

Recent ...

Replies

Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Michael, Thank you very much!

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

Yes, with the knowledge that, it is expected to be underpowered.

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?

Answer: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

The short answer is yes, you can use even a single sample to estimate the batch effect (and therefore control for it in otherwise confounde…

Votes

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

Awards • All