Bioconductor ResultsNames

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DESeq2 resultsNames lfcShrink

updated 2.6 years ago by ATpoint ★ 4.8k • written 2.6 years ago by eve.olszanowski • 0

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resultsNames DESeq2 coefficient

4.0 years ago Jane ▴ 10

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908

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resultsNames DESeq2

written 4.2 years ago by efratsh ▴ 10

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pairwise deseq2 extracting contrasts resultsnames results deseq2

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by Ricardo Rodrigues • 0

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deseq2 resultsnames batch effect contrast

updated 7.5 years ago by Michael Love 43k • written 7.5 years ago by pkachroo ▴ 10

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deseq2 DESeq2 resultsNames

7.7 years ago davichen ▴ 10

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deseq2 resultsnames

updated 7.7 years ago by Michael Love 43k • written 7.7 years ago by mrigaya.mehra ▴ 10

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deseq2 rnaseq resultsnames

7.9 years ago zeynep.nenseth • 0

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DESeq deseq2 resultsnames

8.8 years ago • updated 8.7 years ago akaever ▴ 30

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deseq2 resultsnames multifactorial design

updated 8.9 years ago by Michael Love 43k • written 8.9 years ago by Ira ▴ 10

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deseq2 relevel resultsNames multifactorial design

updated 9.1 years ago by Michael Love 43k • written 9.1 years ago by rclaire ▴ 20

11 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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