Showing : rbgl • reset
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Removing edges from a complete graph to make it a planar maximally filtered graph
RBGL
3.1 years ago jackson0696 • 0
2
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4
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5.4k
views
Unable to upload an App in shinyapps.io with bioconductor packages
shinny graph RBGL
updated 2.0 years ago by ▴ 10 • written 4.1 years ago by • 0
1
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2
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1.1k
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Unable to install RBGL in Bioconductor 3.10 release
rbgl bh
updated 5.4 years ago by 25k • written 5.4 years ago by ▴ 90
2
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4
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2.6k
views
Problems installing RBGL in R
rbgl r package problem
updated 6.4 years ago by 25k • written 6.4 years ago by ▴ 20
1
vote
4
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1.5k
views
Non-Redundant Edges in Connected Components
RBGL
updated 6.8 years ago by 16k • written 6.9 years ago by ★ 1.6k
2
votes
11
replies
2.6k
views
RBGL installation error
rbgl
8.9 years ago Julian Gehring ★ 1.3k
3
votes
2
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2.9k
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Finding nearest neighbors of given hub gene in a co-expression network module
wgcna rbgl graph coexpression hub genes
updated 9.0 years ago by ★ 3.0k • written 9.0 years ago by ▴ 150
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1
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1.2k
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Problem installing RBGL
rbgl boost
9.0 years ago tzintzuni • 0
1
vote
1
reply
2.3k
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Installation error RBGL 1.42
software error installation RBGL compilation error linux cluster
10.2 years ago agroff • 0
0
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6
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4.0k
views
Directed MST (Edmond's Algorithm)
GO graph RBGL GO graph RBGL
updated 11.5 years ago by ★ 13k • written 11.5 years ago by ▴ 90
0
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2
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1.5k
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Issues while installing RBGL package
RBGL RBGL
updated 12.1 years ago by 6.7k • written 12.1 years ago by ▴ 10
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0
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1.2k
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changes to RBGL
graph RBGL graph RBGL
12.8 years ago Vincent J. Carey, Jr. 6.7k
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5
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2.3k
views
'citation("RBGL")' command produces package not found error
RBGL RBGL
updated 12.9 years ago by 6.7k • written 12.9 years ago by ▴ 30
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1
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1.8k
views
deprecated head file for RBGL and compilation failure
graph RBGL PROcess graph RBGL PROcess
updated 13.0 years ago by 6.7k • written 13.0 years ago by ★ 13k
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1
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1.6k
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CRAN packages maintained by you
hexbin gpls RBGL impute Icens hopach maanova RLMM CORREP cycle hexbin gpls RBGL Icens
updated 13.4 years ago by ▴ 430 • written 13.4 years ago by ▴ 10
0
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3
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1.9k
views
RBGL fails to compile / install
RBGL GOstats RBGL GOstats
updated 15.3 years ago by ★ 7.4k • written 15.3 years ago by ▴ 630
0
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4
replies
2.2k
views
problem on install package RBGL
RBGL RBGL
updated 15.4 years ago by ▴ 510 • written 15.4 years ago by ▴ 60
0
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0
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1.3k
views
Problem installing RBGL 1.20.0 using Fedora 11 x64 and gcc 4.4.1
RBGL RBGL
15.6 years ago Philipp Antczak ▴ 10
0
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4
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1.8k
views
RBGL installation issues
RBGL GOstats RBGL GOstats
updated 16.5 years ago by ▴ 510 • written 16.5 years ago by ▴ 930
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0
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1.3k
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affycoretools vennSelect problem
Annotation GO Survival probe annotate genefilter affy graph limma gcrma annaffy RBGL
16.8 years ago Nick Henriquez ▴ 20
0
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6
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2.3k
views
Problems building RBGL package
RBGL RBGL
16.8 years ago Rasmus Ory Nielsen ▴ 50
0
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2
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1.4k
views
affycoretools vennSelect problem
GO Survival annotate genefilter affy graph gcrma annaffy RBGL GOstats biomaRt affyio
updated 16.8 years ago by 68k • written 16.8 years ago by ▴ 30
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0
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1.1k
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Problems with k-cliq definition and calculations using RBGL package
Proteomics graph RBGL Proteomics graph RBGL
17.4 years ago Chanchal Kumar ▴ 130
0
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14
replies
3.1k
views
GOStats/RBGL installation error
RBGL GOstats RBGL GOstats
updated 17.5 years ago by ▴ 170 • written 17.5 years ago by ▴ 260
0
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3
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2.3k
views
hyperGTest, KEGG
Annotation Pathways multtest siggenes RBGL GOstats Annotation Pathways multtest siggenes
updated 18.0 years ago by ★ 7.4k • written 18.0 years ago by ▴ 80
0
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0
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1.3k
views
RBGL: bfs & dfs with directed graphs
GO Biobase annotate geneplotter graph Rgraphviz annaffy RBGL convert GO Biobase graph
18.0 years ago stephen edwards ▴ 10
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0
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1.3k
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affy u133x3p chip
Microarray Genetics GO Preprocessing Cancer CGH cdf probe annotate genefilter affy RBGL
18.0 years ago Dick Beyer ★ 1.4k
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2
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1.8k
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can't load affycoretools because GOstats is broken. Can I load affycoretools without dependencies to use some functions?
GO Survival Biobase genefilter affy limma RBGL GOstats Category affyio affycoretools GO
18.2 years ago Mark W Kimpel ▴ 830
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1
reply
1.3k
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Problem with limma2biomaRt and MBNI custom CDF
Annotation GO cdf DynDoc genefilter tkWidgets affy graph limma RBGL biomaRt Category
updated 18.2 years ago by 68k • written 18.2 years ago by ▴ 300
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4
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1.7k
views
error with AffyQCReport
cdf annotate affy limma RBGL simpleaffy GOstats affyQCReport cdf annotate affy limma
updated 18.2 years ago by ★ 13k • written 18.2 years ago by ▴ 830
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6
replies
1.9k
views
GOstats and custom annotation problem
Annotation GO annotate genefilter graph AnnBuilder RBGL GOstats Category Annotation GO
updated 18.3 years ago by 21k • written 18.3 years ago by ▴ 310
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2
replies
1.8k
views
problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 18.3 years ago by 68k • written 18.3 years ago by ▴ 890
0
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11
replies
3.1k
views
trouble hacking plotPCA
GO Survival Biobase genefilter affy affydata graph limma gcrma matchprobes affyPLM RBGL
updated 18.3 years ago by ▴ 10 • written 18.3 years ago by ★ 2.2k
0
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0
replies
992
views
RBGL installation on Ubuntu 6.10
RBGL RBGL
18.3 years ago lgautier@altern.org ▴ 950
0
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5
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2.0k
views
error coercing an exprSet to ExpressionSet
GO cdf Biobase annotate multtest affy limma RBGL GOstats Category affycoretools GO cdf
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ▴ 890
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3
replies
2.3k
views
Situation of the legend in the plotPCA of the affycoretools library
GO Survival cdf annotate genefilter multtest affy graph limma RBGL GOstats Category GO
updated 18.5 years ago by 68k • written 18.5 years ago by ▴ 350
0
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2
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1.3k
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error with GOHyperG
drosophila2 cdf Biobase annotate genefilter multtest RBGL GOstats drosophila2 cdf RBGL
updated 18.6 years ago by ★ 7.4k • written 18.6 years ago by ▴ 10
0
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1
reply
1.4k
views
[R] problem loading affycoretools - solved!
Biobase Ruuid genefilter multtest graph limma gcrma matchprobes affyPLM RBGL simpleaffy
updated 18.7 years ago by ★ 7.4k • written 18.7 years ago by ★ 2.2k
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0
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1.3k
views
blocking in limma gives an estimability problem
GO hgu95av2 Ruuid multtest affy graph limma RBGL qvalue Category affyio GO hgu95av2
18.8 years ago Pedro López Romero ▴ 360
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2
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1.6k
views
problem with latest version of graph
GO annotate genefilter multtest affy graph Rgraphviz RBGL GOstats affyio affycoretools
18.8 years ago Kimpel, Mark W ▴ 890
0
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0
replies
910
views
R hangs when applying johnson.all.pairs.sp (in library RBGL) to some graphs
graph RBGL graph RBGL
18.8 years ago Li.Long@isb-sib.ch ▴ 510
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14
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3.2k
views
RBGL 1.8.1 installation error on linux
Cancer graph RBGL Cancer graph RBGL
updated 18.9 years ago by ▴ 510 • written 18.9 years ago by ▴ 300
0
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0
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1.2k
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RBGL, shortest paths, edge weights, and the new graph class
SystemsBiology graph RBGL SystemsBiology graph RBGL
18.9 years ago Seth Falcon ★ 7.4k
0
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1
reply
917
views
johnson.all.pairs.sp (RBGL) causes R to hang with certain graphs
graph RBGL graph RBGL
updated 18.9 years ago by ▴ 50 • written 18.9 years ago by ★ 7.4k
0
votes
1
reply
993
views
RBGL package
RBGL RBGL
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 10
0
votes
0
replies
784
views
Graph Layout
graph RBGL graph RBGL
19.2 years ago Li Long ▴ 120
0
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1
reply
1.1k
views
rbind in annaffy problem
GO hgu95av2 rat2302 cdf annotate affy graph annaffy RBGL GOstats biomaRt GO hgu95av2
updated 19.3 years ago by 68k • written 19.3 years ago by ▴ 890
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0
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1.3k
views
UPDATE: a problem with Metadat package: hgu133a2 ----- Fwd: RE: Should BE964473 be mapped to Hs. 333958 or Hs. 282260?
Annotation GO Cancer hgu95av2 hu6800 probe annotate affy graph RBGL GOstats Annotation
19.5 years ago Shi, Tao ▴ 720
0
votes
6
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1.8k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 19.8 years ago by ★ 7.4k • written 19.8 years ago by ★ 1.4k
0
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2
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1.5k
views
pathway analysis package
RBGL KEGGSOAP RBGL KEGGSOAP
updated 20.3 years ago by 21k • written 20.3 years ago by ▴ 60
50 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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