Bioconductor R package problem

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package installation compilation error r package problem shared libraries loading error

6.2 years ago Martin Maechler ▴ 330

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rbgl r package problem

updated 6.2 years ago by Martin Morgan 25k • written 6.2 years ago by ngs06 ▴ 20

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package development r package problem build/check error mmappr2

6.4 years ago Kyle Johnsen ▴ 30

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r package problem

updated 6.5 years ago by Mike Smith ★ 6.6k • written 6.5 years ago by hamedhm • 0

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r package problem

6.8 years ago rdpinho • 0

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r package problem

7.7 years ago Mohamad S. Hasan • 0

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package installation r package problem

updated 8.4 years ago by Martin Morgan 25k • written 8.4 years ago by sumudu_rangika ▴ 20

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software error r package problem

updated 8.7 years ago by Martin Morgan 25k • written 8.7 years ago by kkp7700 • 0

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R package problem

9.3 years ago zjzace • 0

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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k

> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…

Answer: Automatically install dependencies by ATpoint ★ 4.7k

The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…

Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k

> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…

Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k

This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k

Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…

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A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo

Comment: Weird p-values using DESeq2?

Comment: Overcoming confounding in batch effect correction

Answer: Store Matrix in DataFrame Cell

Answer: enrichGOgradient color change

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