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ql f-test
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4
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Adjusting for procedural effect and deciding on statistical test
EdgeR
glmlrt()
ql f-test
7.6 years ago • updated 6.9 years ago
elineverbon
▴ 20
3
votes
2
replies
6.0k
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QLF or LRT in edgeR for paired sample designs?
edger
paired samples
glm
QL F-test
LR-test
updated 7.8 years ago by
Aaron Lun
★ 28k • written 7.8 years ago by
Akira Imamoto
• 0
2 results • Page
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Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
Hi James, thank you for your answer. I understand how the pvalue might be significant or not depending on the universe. But I still don't …
Comment: GESA with certain gene list returns no result with human genom, but many result
by
sawa
• 0
Thank you so much! I did not know the rule that human genes are written in upper case and mouse in first letter capitalized format. When I …
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for looking into this and for your explanation! As a follow-up, would it be possible in future releases of featureCounts to pro…
Comment: error loading collectTRI regulon
by
silvaesilva.da
• 0
Fantastic. Thank you very much. Everything has been sorted out
Answer: DESeq2 returns results for group with just one replicate
by
James W. MacDonald
66k
There is no problem having only one replicate per group, so long as you have replicates for other groups. The degrees of freedom are based …
Votes
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
Answer: DESeq2 returns results for group with just one replicate
Answer: DESeq2 returns results for group with just one replicate
Comment: error loading collectTRI regulon
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