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proxy
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reset
0
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7
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1.8k
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Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages
Proxy
Bioconductor
GEOquery
Internet_connection_problem
13 months ago • updated 12 months ago
needNGS
• 0
1
vote
3
replies
5.0k
views
installation failure with BiocManager (URL status was 'Couldn't resolve proxy name')
bioconductor
installation
proxy
BiocManager
updated 4.9 years ago by
Martin Morgan
25k • written 4.9 years ago by
chen
• 0
2
votes
1
reply
10k
views
Error: status was 'SSL connect error'
bioconductor
proxy
macOS
R
RStudio
updated 5.5 years ago by
Martin Morgan
25k • written 5.5 years ago by
mcall
▴ 20
2
votes
3
replies
2.0k
views
Could not access the Bioconductor repository
bioconductor
proxy
arrayexpress
updated 6.3 years ago by
James W. MacDonald
68k • written 6.3 years ago by
maxininfa
• 0
0
votes
0
replies
1.3k
views
Rjava proxy configuration ?
rJAVA
java
proxy
connectiontimeout
rdavidwebservice
9.0 years ago
Julien FOURET
• 0
19
votes
4
replies
6.0k
views
biomaRt no longer works with proxy after upgrade
biomart
proxy
rcurl
updated 9.5 years ago by
hygine
▴ 140 • written 9.5 years ago by
enricoferrero
▴ 680
6 results • Page
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Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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