Bioconductor Promoter

Showing : promoter • reset

votes

replies

1.4k

views

promoter GenomicRanges rtracklayer GRanges

3.6 years ago Arslan • 0

votes

replies

1.6k

views

promoter

updated 4.9 years ago by Hervé Pagès 16k • written 4.9 years ago by Charles Plessy ▴ 180

vote

replies

1.6k

views

r granges promoter

updated 6.1 years ago by Hervé Pagès 16k • written 6.1 years ago by eggrandio • 0

votes

replies

1.2k

views

TSS promoter cage cager

6.4 years ago bharata1803 ▴ 60

votes

replies

1.6k

views

genomicranges genomicfeatures promoter upstream_flank

6.5 years ago Wojeff • 0

votes

replies

2.4k

views

repitools promoter tss annotation

7.1 years ago Ryan C. Thompson ★ 7.9k

vote

replies

2.3k

views

TxDB genomicfeatures promoter getpromoterseq

updated 7.1 years ago by Hervé Pagès 16k • written 7.1 years ago by rbenel ▴ 40

vote

replies

1.4k

views

dexseq promoter utr

updated 8.8 years ago by Alejandro Reyes ★ 1.9k • written 8.8 years ago by joan.hooper • 0

vote

replies

2.3k

views

bsgenome txdb promoter

updated 9.2 years ago by Martin Morgan 25k • written 9.2 years ago by sekawaiwai2006 ▴ 20

votes

replies

3.3k

views

promoter granges refseq ucsc organismdb

updated 9.4 years ago by Robert Castelo ★ 3.4k • written 9.4 years ago by efoss ▴ 10

votes

replies

1.6k

views

VariantAnnotation promoter drosophila melanogaster

updated 10.2 years ago by Valerie Obenchain ★ 6.8k • written 10.2 years ago by lidia.mateo ▴ 30

11 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

Votes

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

Awards • All