Bioconductor Promoter

Showing : promoter • reset

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1.4k

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promoter GenomicRanges rtracklayer GRanges

3.5 years ago Arslan • 0

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1.5k

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promoter

updated 4.8 years ago by Hervé Pagès 16k • written 4.8 years ago by Charles Plessy ▴ 180

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1.6k

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r granges promoter

updated 6.0 years ago by Hervé Pagès 16k • written 6.0 years ago by eggrandio • 0

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1.2k

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TSS promoter cage cager

6.3 years ago bharata1803 ▴ 60

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1.6k

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genomicranges genomicfeatures promoter upstream_flank

6.4 years ago Wojeff • 0

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2.4k

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repitools promoter tss annotation

7.0 years ago Ryan C. Thompson ★ 7.9k

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2.3k

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TxDB genomicfeatures promoter getpromoterseq

updated 7.0 years ago by Hervé Pagès 16k • written 7.0 years ago by rbenel ▴ 40

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1.4k

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dexseq promoter utr

updated 8.7 years ago by Alejandro Reyes ★ 1.9k • written 8.7 years ago by joan.hooper • 0

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2.2k

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bsgenome txdb promoter

updated 9.1 years ago by Martin Morgan 25k • written 9.1 years ago by sekawaiwai2006 ▴ 20

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3.2k

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promoter granges refseq ucsc organismdb

updated 9.3 years ago by Robert Castelo ★ 3.4k • written 9.3 years ago by efoss ▴ 10

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1.6k

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VariantAnnotation promoter drosophila melanogaster

updated 10.1 years ago by Valerie Obenchain ★ 6.8k • written 10.1 years ago by lidia.mateo ▴ 30

11 results • Page 1 of 1

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Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Answer: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

I strongly recommend to not concern yourself with these sorts of marginal problems because you're entering a realm in which you're entirely…

Comment: Problem using locateVariants() from the VariantAnnotation package by Marco • 0

Ok, I think I found the problem. By looking at the `locateVariants()` source code, I was able to pinpoint that the problems is when trying …

Comment: Conumee for EPIC and EPICv2 copy number by Adam • 0

As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…

Comment: graper 1.22 Build is Broken by shepherl 4.1k

This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

Awards • All

Popular Question to Matthew McCormack ▴ 180

Popular Question to James W. MacDonald 68k