Bioconductor Promoter

Showing : promoter • reset

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1.3k

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promoter GenomicRanges rtracklayer GRanges

3.2 years ago Arslan • 0

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1.4k

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promoter

updated 4.5 years ago by Hervé Pagès 16k • written 4.5 years ago by Charles Plessy ▴ 180

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1.4k

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r granges promoter

updated 5.7 years ago by Hervé Pagès 16k • written 5.7 years ago by eggrandio • 0

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1.1k

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TSS promoter cage cager

6.0 years ago bharata1803 ▴ 60

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1.5k

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genomicranges genomicfeatures promoter upstream_flank

6.2 years ago Wojeff • 0

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2.2k

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repitools promoter tss annotation

6.7 years ago Ryan C. Thompson ★ 7.9k

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2.2k

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TxDB genomicfeatures promoter getpromoterseq

updated 6.7 years ago by Hervé Pagès 16k • written 6.7 years ago by rbenel ▴ 40

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1.3k

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dexseq promoter utr

updated 8.4 years ago by Alejandro Reyes ★ 1.9k • written 8.4 years ago by joan.hooper • 0

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2.1k

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bsgenome txdb promoter

updated 8.8 years ago by Martin Morgan 25k • written 8.8 years ago by sekawaiwai2006 ▴ 20

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3.0k

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promoter granges refseq ucsc organismdb

updated 9.0 years ago by Robert Castelo ★ 3.4k • written 9.0 years ago by efoss ▴ 10

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1.5k

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VariantAnnotation promoter drosophila melanogaster

updated 9.9 years ago by Valerie Obenchain ★ 6.8k • written 9.9 years ago by lidia.mateo ▴ 30

11 results • Page 1 of 1

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Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Votes

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

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