Bioconductor Promoter

Showing : promoter • reset

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1.3k

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promoter GenomicRanges rtracklayer GRanges

3.4 years ago Arslan • 0

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1.5k

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promoter

updated 4.7 years ago by Hervé Pagès 16k • written 4.7 years ago by Charles Plessy ▴ 180

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1.5k

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r granges promoter

updated 5.9 years ago by Hervé Pagès 16k • written 5.9 years ago by eggrandio • 0

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1.1k

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TSS promoter cage cager

6.2 years ago bharata1803 ▴ 60

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1.6k

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genomicranges genomicfeatures promoter upstream_flank

6.3 years ago Wojeff • 0

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2.3k

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repitools promoter tss annotation

6.9 years ago Ryan C. Thompson ★ 7.9k

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2.2k

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TxDB genomicfeatures promoter getpromoterseq

updated 6.9 years ago by Hervé Pagès 16k • written 6.9 years ago by rbenel ▴ 40

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1.3k

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dexseq promoter utr

updated 8.6 years ago by Alejandro Reyes ★ 1.9k • written 8.6 years ago by joan.hooper • 0

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2.2k

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bsgenome txdb promoter

updated 9.0 years ago by Martin Morgan 25k • written 9.0 years ago by sekawaiwai2006 ▴ 20

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3.2k

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promoter granges refseq ucsc organismdb

updated 9.2 years ago by Robert Castelo ★ 3.4k • written 9.2 years ago by efoss ▴ 10

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1.6k

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VariantAnnotation promoter drosophila melanogaster

updated 10.1 years ago by Valerie Obenchain ★ 6.8k • written 10.1 years ago by lidia.mateo ▴ 30

11 results • Page 1 of 1

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Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Votes

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

A: PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?

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Popular Question to bastien_chassagnol • 0