Bioconductor Plotmds

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plotMDS limma

16 months ago • updated 15 months ago Cen • 0

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3.3k

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plotMDS limma

updated 17 months ago by Gordon Smyth 51k • written 17 months ago by liujy4 • 0

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1.6k

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plotMDS PCA RNASeq MDS

updated 2.7 years ago by Gordon Smyth 51k • written 2.7 years ago by Raito92 ▴ 60

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1.5k

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limma plotMDS

3.3 years ago jamie.gearing ▴ 60

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4.5k

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edgeR plotmds differential gene expression MDS mdsplot

updated 5.9 years ago by Gordon Smyth 51k • written 5.9 years ago by ilovesuperheroes1993 • 0

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866

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plotMDS Cell lines limma

updated 6.2 years ago by Gordon Smyth 51k • written 6.2 years ago by Alexander Azarian ▴ 30

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1.1k

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tree bootstrap dgelist plotmds

6.7 years ago Larry K. • 0

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6.5k

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limma edger plotmds tmm masigpro

6.9 years ago dacaba.92 ▴ 10

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1.8k

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edger plotmds

7.2 years ago fawazfebin ▴ 60

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2.2k

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edger plotmds

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by mictadlo ▴ 10

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1.8k

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affymetrix microarrays sva combat sva batch effect plotMDS

updated 8.2 years ago by Jeff Leek ▴ 650 • written 8.2 years ago by svlachavas ▴ 830

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1.3k

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rgl plot3d plotmds

8.6 years ago Adam • 0

12 results • Page 1 of 1

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Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0

This makes a lot of sense, thank you very much!

Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0

Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…

Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k

Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…

Comment: Handling Epic Array Data by Melisa Tecik • 0

Thanks a lot for the help. You saved my day

Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k

The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…

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A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

Answer: Differene between the Wald and LRT test for time-series gene expression data

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

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