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plotMDS
•
reset
1
vote
2
replies
928
views
loading scores using plotMDS in limma
plotMDS
limma
11 months ago • updated 10 months ago
Cen
• 0
1
vote
3
replies
2.3k
views
Making MDS plot
plotMDS
limma
updated 12 months ago by
Gordon Smyth
51k • written 12 months ago by
liujy4
• 0
2
votes
2
replies
1.3k
views
Make samples symbols bigger in PCA / MDS analysis with plotMDS function
plotMDS
PCA
RNASeq
MDS
updated 2.3 years ago by
Gordon Smyth
51k • written 2.3 years ago by
Raito92
▴ 60
2
votes
2
replies
1.3k
views
plotMDS dimensions bug
limma
plotMDS
2.9 years ago
jamie.gearing
▴ 60
2
votes
8
replies
4.0k
views
MDS Plot help in edgeR
edgeR
plotmds
differential gene expression
MDS
mdsplot
updated 5.5 years ago by
Gordon Smyth
51k • written 5.5 years ago by
ilovesuperheroes1993
• 0
0
votes
1
reply
756
views
Visualization of analysis of multiple cell lines
plotMDS
Cell lines
limma
updated 5.8 years ago by
Gordon Smyth
51k • written 5.8 years ago by
Alexander Azarian
▴ 30
0
votes
0
replies
956
views
Using log2FC distance matrix in Boot.Phylo to create bootstrapped trees
tree
bootstrap
dgelist
plotmds
6.3 years ago
Larry K.
• 0
3
votes
7
replies
6.0k
views
Limma PlotMDS: what values should be used?
limma
edger
plotmds
tmm
masigpro
6.6 years ago • updated 6.5 years ago
dacaba.92
▴ 10
4
votes
6
replies
1.6k
views
EdgeR: Replicate samples diverge in MDS plot
edger
plotmds
6.8 years ago
fawazfebin
▴ 60
3
votes
1
reply
2.0k
views
column nubering plotMDS
edger
plotmds
updated 6.8 years ago by
Aaron Lun
★ 28k • written 6.8 years ago by
mictadlo
▴ 10
1
vote
1
reply
1.7k
views
Inspection of batch effect correction success with ComBat in R, regarding a merged dataset comprised of 4 different batches
affymetrix microarrays
sva
combat sva
batch effect
plotMDS
updated 7.8 years ago by
Jeff Leek
▴ 650 • written 7.9 years ago by
svlachavas
▴ 830
0
votes
0
replies
1.2k
views
Is it possible to make some spheres around groups of points (plot3d) and measure distances between them?
rgl
plot3d
plotmds
8.2 years ago
Adam
• 0
12 results • Page
1 of 1
Recent ...
Replies
Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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