Bioconductor Piano

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3.0k

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affy limma piano

updated 5.2 years ago by James W. MacDonald 67k • written 5.2 years ago by abolfazl.nikakhtar • 0

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21k

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ssgsea gsva piano egsea

updated 11 months ago by amin8w ▴ 10 • written 7.3 years ago by sina.nassiri ▴ 130

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2.0k

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rsbml piano libsbml gene set enrichment analysis

updated 6.0 years ago by Michael Lawrence ★ 11k • written 6.0 years ago by jan.strauss • 0

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1.3k

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piano microarray

updated 7.0 years ago by James W. MacDonald 67k • written 7.0 years ago by rf • 0

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1.4k

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piano gseabase

7.8 years ago Lluís Revilla Sancho ▴ 760

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1.5k

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piano runGSA runtime

updated 7.8 years ago by Leif Väremo ▴ 70 • written 7.9 years ago by rubi ▴ 110

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2.0k

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deseq2 gene ontology piano

8.0 years ago simonp.snoeck • 0

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1.9k

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piano runGSA

updated 8.5 years ago by Leif Väremo ▴ 70 • written 8.5 years ago by rubi ▴ 110

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1.3k

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Piano List

updated 9.6 years ago by Leif Väremo ▴ 70 • written 9.6 years ago by nonCodingGene ▴ 10

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2.6k

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piano

updated 9.7 years ago by Leif Väremo ▴ 70 • written 9.7 years ago by nonCodingGene ▴ 10

10 results • Page 1 of 1

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Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0

This makes a lot of sense, thank you very much!

Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0

Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…

Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k

Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…

Comment: Handling Epic Array Data by Melisa Tecik • 0

Thanks a lot for the help. You saved my day

Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k

The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…

Votes

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

Answer: Differene between the Wald and LRT test for time-series gene expression data

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

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