Bioconductor Piano

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2.9k

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affy limma piano

updated 5.1 years ago by James W. MacDonald 67k • written 5.1 years ago by abolfazl.nikakhtar • 0

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21k

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ssgsea gsva piano egsea

updated 11 months ago by amin8w ▴ 10 • written 7.3 years ago by sina.nassiri ▴ 130

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2.0k

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rsbml piano libsbml gene set enrichment analysis

updated 6.0 years ago by Michael Lawrence ★ 11k • written 6.0 years ago by jan.strauss • 0

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1.3k

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piano microarray

updated 7.0 years ago by James W. MacDonald 67k • written 7.0 years ago by rf • 0

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1.4k

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piano gseabase

7.8 years ago Lluís Revilla Sancho ▴ 760

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1.5k

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piano runGSA runtime

updated 7.8 years ago by Leif Väremo ▴ 70 • written 7.8 years ago by rubi ▴ 110

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2.0k

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deseq2 gene ontology piano

8.0 years ago simonp.snoeck • 0

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1.9k

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piano runGSA

updated 8.4 years ago by Leif Väremo ▴ 70 • written 8.4 years ago by rubi ▴ 110

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1.3k

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Piano List

updated 9.6 years ago by Leif Väremo ▴ 70 • written 9.6 years ago by nonCodingGene ▴ 10

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2.5k

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piano

updated 9.7 years ago by Leif Väremo ▴ 70 • written 9.7 years ago by nonCodingGene ▴ 10

10 results • Page 1 of 1

Recent ...

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Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

Comment: Adjusted p-values become NA when sub-setting samples by txema.heredia • 0

Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…

Answer: DESeq2 interaction between cancer cells and microenvironment cells by Michael Love 42k

I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Fahd • 0

Thanks for looking into this. This issue results in the incorrect usage of multiple ORA software including EnrichR.

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

Yes, I understand the implications of replacing the `OrgDb` packages in release. Maybe an upload to the annotationHub or GitHub could be an…

Votes

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

Awards • All

Supporter to Paul Harrison ▴ 100

Popular Question to Mikhail Dozmorov ▴ 30