Bioconductor Piano

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affy limma piano

updated 5.6 years ago by James W. MacDonald 68k • written 5.6 years ago by abolfazl.nikakhtar • 0

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21k

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ssgsea gsva piano egsea

updated 16 months ago by amin8w ▴ 10 • written 7.7 years ago by sina.nassiri ▴ 130

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2.2k

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rsbml piano libsbml gene set enrichment analysis

updated 6.4 years ago by Michael Lawrence ★ 11k • written 6.4 years ago by jan.strauss • 0

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1.4k

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piano microarray

updated 7.4 years ago by James W. MacDonald 68k • written 7.4 years ago by rf • 0

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1.5k

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piano gseabase

8.2 years ago Lluís Revilla Sancho ▴ 760

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1.6k

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piano runGSA runtime

updated 8.2 years ago by Leif Väremo ▴ 70 • written 8.2 years ago by rubi ▴ 110

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2.1k

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deseq2 gene ontology piano

8.4 years ago simonp.snoeck • 0

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2.0k

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piano runGSA

updated 8.8 years ago by Leif Väremo ▴ 70 • written 8.9 years ago by rubi ▴ 110

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1.4k

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Piano List

updated 10.0 years ago by Leif Väremo ▴ 70 • written 10.0 years ago by nonCodingGene ▴ 10

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2.7k

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piano

updated 10.1 years ago by Leif Väremo ▴ 70 • written 10.1 years ago by nonCodingGene ▴ 10

10 results • Page 1 of 1

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Answer: Model performance for spline modelling of RNA-seq timecourses in edgeR by Gordon Smyth 52k

I don't understand your question, because there is no difference between limma or glmFit or glmQLFit in terms of spline modeling or the tes…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0 ![enter image description here][1]…

Answer: DESeq2 - am I extracting results incorrectly? by James W. MacDonald 68k

If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…

Answer: Origin of the labels for the SingleCellMultiModal dataset by ATpoint ★ 4.8k

If you check the underlying code a bit you find that there is a file with data sources: ```r modes_file <- system.file("extdata", "metadat…

Votes

Limma outputs different results for same sample?

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder

Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

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