Bioconductor PhenoData

Showing : phenoData • reset

0

votes

0

replies

780

views

HTqPCR phenoData esetVis pData

3.4 years ago Marcelo Laia ▴ 450

0

votes

3

replies

1.8k

views

affycoretools ReadAffy Biobase phenoData affy

updated 4.3 years ago by James W. MacDonald 68k • written 4.3 years ago by bastien_chassagnol • 0

0

votes

0

replies

958

views

HtqPCR grouping visualization R phenoData

5.6 years ago mohammedtoufiq91 ▴ 10

1

vote

1

reply

2.5k

views

FCS flow cytometry bioconductor phenoData Loading Data

updated 8.2 years ago by SamGG ▴ 360 • written 8.2 years ago by smajor • 0

4 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

Votes

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

Awards • All