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pdinfobuilder
•
reset
2
votes
8
replies
1.2k
views
pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses
oligo
pdInfoBuilder
3.0 years ago • updated 2.9 years ago
efoss
▴ 10
2
votes
3
replies
1.2k
views
Annotation package generation for HTA-2_0 by pdInfoBuilder fails
microarray
pdInfoBuilder
oligo
updated 4.0 years ago by
James W. MacDonald
66k • written 4.0 years ago by
Marton Papp
• 0
6
votes
4
replies
2.7k
views
Affymetrix miRNA4.1 / oligo package / pd.mirna.4.1
microarray
mirna
oligo package
pdinfobuilder
pd.mirna
updated 4.6 years ago by
soumyab.g
▴ 10 • written 7.1 years ago by
rolan.zauner
▴ 20
0
votes
7
replies
1.8k
views
oligo and GenericPDInfo
affy
oligoclasses
oligo package
pdinfobuilder
annotationdbi
updated 7.0 years ago by
James W. MacDonald
66k • written 7.0 years ago by
Aedin Culhane
▴ 510
1
vote
3
replies
3.0k
views
How to analyse clariom d human files
limma
pdinfobuilder
affy
cdf
7.3 years ago
yusuf.khan
▴ 10
3
votes
7
replies
1.8k
views
Oligo: cannot fit robust Probe Level linear Models / fitPLM when using a custom CDF
oligo
pdinfobuilder
pd.mogene.1.1.st
customcdf
updated 7.8 years ago by
James W. MacDonald
66k • written 8.3 years ago by
Guido Hooiveld
★ 4.0k
1
vote
5
replies
2.5k
views
Affymetrix Rat Transcriptome Array (Clariom D) annotation
annotation
microarray
pdinfobuilder
oligo
7.8 years ago
Ed D
• 0
0
votes
3
replies
2.7k
views
Draft support for HTA 2.0 with oligo
Annotation
pdInfoBuilder
Annotation
pdInfoBuilder
updated 8.0 years ago by
aswathym
▴ 10 • written 10.4 years ago by
Johann Pellet
▴ 10
1
vote
0
replies
2.3k
views
The current annotation for Affymetrix HTA 2.0 array is problematic
oligo
pdInfoBuilder
pd.hta.2.0
9.0 years ago
tangboyun
▴ 30
0
votes
2
replies
1.3k
views
Error with annotation package with pdInfoBuilder for NimbleGen arrays
pdinfobuilder
oligo
updated 9.1 years ago by
James W. MacDonald
66k • written 9.1 years ago by
george.kararigas
• 0
0
votes
5
replies
1.8k
views
Annotation package built with pdInfoBuilder cannot be installed
annotation
pdinfobuilder
9.3 years ago
alakatos
▴ 130
1
vote
3
replies
2.5k
views
Probeset/Transcript cluster definitions for HTA2.0 using pdInfoBuilder
BiocViews
Annotation
Organism
biocViews
pdInfoBuilder
BiocViews
BiocViews
Annotation
updated 9.9 years ago by
James W. MacDonald
66k • written 9.9 years ago by
Guilherme Rocha
▴ 40
0
votes
1
reply
1.4k
views
pd.mirna.4.1
pdInfoBuilder
pdInfoBuilder
updated 10.2 years ago by
James W. MacDonald
66k • written 10.2 years ago by
Guest User
★ 13k
0
votes
0
replies
1.5k
views
Draft support for HTA 2.0 with oligo
Annotation
oligo
pdInfoBuilder
Annotation
oligo
pdInfoBuilder
10.2 years ago
Elena Serrano
▴ 30
0
votes
0
replies
2.2k
views
Affymetrix HTA 2 array analysis
BiocViews
Annotation
Cancer
Breast
Organism
PROcess
biocViews
pdInfoBuilder
BiocViews
10.2 years ago
Elena Serrano
▴ 30
0
votes
4
replies
6.4k
views
Problem "Error: is.character(filenames) is not TRUE" in read.xysfiles (Oligo package)
Annotation
oligo
pdInfoBuilder
Annotation
oligo
pdInfoBuilder
updated 10.2 years ago by
James W. MacDonald
66k • written 10.2 years ago by
Tommaso Raffaello
▴ 60
0
votes
3
replies
1.2k
views
pdInfoBuilder - problem installing the annotation package
Annotation
pdInfoBuilder
Annotation
pdInfoBuilder
updated 10.3 years ago by
Benilton Carvalho
★ 4.3k • written 10.3 years ago by
Tommaso Raffaello
▴ 60
0
votes
1
reply
1.8k
views
Draft support for HTA 2.0 with oligo
Annotation
oligo
pdInfoBuilder
Annotation
oligo
pdInfoBuilder
updated 10.4 years ago by
Mark Cowley
▴ 910 • written 10.4 years ago by
Benilton Carvalho
★ 4.3k
0
votes
0
replies
3.4k
views
Affymetrix HTA 2 array analysis
BiocViews
Annotation
Cancer
Breast
Organism
PROcess
biocViews
pdInfoBuilder
BiocViews
10.5 years ago
Elena Serrano
▴ 30
0
votes
1
reply
2.1k
views
Affymetrix HTA 2 array analysis
BiocViews
Annotation
Cancer
Breast
Organism
PROcess
biocViews
pdInfoBuilder
BiocViews
updated 10.6 years ago by
Benilton Carvalho
★ 4.3k • written 10.6 years ago by
Stephen Turner
▴ 290
0
votes
1
reply
1.3k
views
upload multiple genelists at a time for GO or pathway enrichment
GO
cdf
oligo
pdInfoBuilder
xps
GO
cdf
oligo
pdInfoBuilder
xps
updated 10.7 years ago by
Pekka Kohonen
▴ 190 • written 10.7 years ago by
Helen Smith
▴ 100
0
votes
1
reply
1.2k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation
PROcess
pdInfoBuilder
charm
Annotation
PROcess
pdInfoBuilder
charm
updated 10.8 years ago by
Nitesh Turaga
▴ 50 • written 10.8 years ago by
Benilton Carvalho
★ 4.3k
0
votes
1
reply
1.2k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation
PROcess
pdInfoBuilder
charm
Annotation
PROcess
pdInfoBuilder
charm
10.9 years ago
Nitesh Turaga
▴ 50
0
votes
1
reply
1.4k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation
PROcess
pdInfoBuilder
charm
Annotation
PROcess
pdInfoBuilder
charm
updated 10.9 years ago by
Benilton Carvalho
★ 4.3k • written 10.9 years ago by
Nitesh Turaga
▴ 50
0
votes
4
replies
1.6k
views
FeatureExpressionSet using list.files() in place of read.xysfiles()
Microarray
Annotation
GO
Organism
probe
annotate
limma
convert
pdInfoBuilder
sva
GO
sva
updated 11.1 years ago by
Benilton Carvalho
★ 4.3k • written 11.1 years ago by
Johnson, Franklin Theodore
▴ 140
0
votes
10
replies
3.1k
views
PAIR files -- feature set table
Microarray
Annotation
Organism
annotate
pdInfoBuilder
Microarray
Annotation
Organism
updated 11.1 years ago by
Benilton Carvalho
★ 4.3k • written 11.1 years ago by
Guest User
★ 13k
0
votes
7
replies
1.6k
views
install pdInfoBuilder package
Annotation
pdInfoBuilder
Annotation
pdInfoBuilder
updated 11.6 years ago by
Benilton Carvalho
★ 4.3k • written 11.6 years ago by
Julie Collet
▴ 40
0
votes
0
replies
864
views
Nimblegen microarray MM8_60mer_expr
Microarray
Annotation
oligo
pdInfoBuilder
Microarray
Annotation
oligo
pdInfoBuilder
11.7 years ago
Benilton Carvalho
★ 4.3k
0
votes
4
replies
1.6k
views
Passing multiple files to pdInfobuilder
BiocViews
biocViews
pdInfoBuilder
BiocViews
BiocViews
biocViews
pdInfoBuilder
updated 11.7 years ago by
Benilton Carvalho
▴ 50 • written 11.7 years ago by
Guest User
★ 13k
0
votes
3
replies
2.0k
views
oligo and pd.aragene.1.1.st annotation
Annotation
limma
Category
pdInfoBuilder
Annotation
limma
Category
pdInfoBuilder
updated 11.9 years ago by
Marc Carlson
★ 7.2k • written 11.9 years ago by
Stephen Rolfe
▴ 20
0
votes
2
replies
1.3k
views
oligo and pdInfoBuilder
Annotation
Yeast
oligo
pdInfoBuilder
Annotation
Yeast
oligo
pdInfoBuilder
updated 12.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.1 years ago by
Simon Melov
▴ 340
0
votes
0
replies
1.3k
views
Nimblegen promoter medip array platform design file problem
BiocViews
Annotation
Organism
biocViews
pdInfoBuilder
charm
BiocViews
BiocViews
Annotation
12.2 years ago
zeynep özkeserli
▴ 160
0
votes
0
replies
1.4k
views
Nimblegen promoter medip array platform design file problem
BiocViews
Annotation
Organism
biocViews
pdInfoBuilder
charm
BiocViews
BiocViews
Annotation
12.2 years ago
zeynep özkeserli
▴ 160
0
votes
2
replies
1.4k
views
oligo package: extracting position, sequence, and intensity from Affymetrix tiling array
BiocViews
Organism
biocViews
oligo
pdInfoBuilder
BiocViews
BiocViews
Organism
biocViews
updated 12.3 years ago by
Benilton Carvalho
★ 4.3k • written 12.3 years ago by
Guest User
★ 13k
0
votes
2
replies
1.4k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation
oligo
pdInfoBuilder
oligoClasses
Annotation
oligo
pdInfoBuilder
oligoClasses
updated 12.3 years ago by
Benilton Carvalho
★ 4.3k • written 12.3 years ago by
Groot, Philip de
▴ 630
0
votes
0
replies
1.5k
views
Using pdInfoBuilder for Human Exon Array
BiocViews
Annotation
Organism
cdf
biocViews
oligo
pdInfoBuilder
BiocViews
BiocViews
cdf
13.1 years ago
Maria Rodrigo-Domingo / Region Nordjyll…
▴ 10
0
votes
1
reply
1000
views
pdInfoBuilder
Annotation
pdInfoBuilder
Annotation
pdInfoBuilder
updated 13.2 years ago by
Benilton Carvalho
★ 4.3k • written 13.2 years ago by
Barbara Bo-Ju Shih
▴ 40
0
votes
3
replies
1.2k
views
Error using pdInfoBuilder for NimbleGen Array
Annotation
pdInfoBuilder
Annotation
pdInfoBuilder
updated 13.4 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.4 years ago by
Kate Turner
▴ 20
0
votes
0
replies
1.1k
views
Need help with pdInfoBuilder package for human ST arrays
Annotation
affy
oligo
pdInfoBuilder
Annotation
affy
oligo
pdInfoBuilder
14.0 years ago
He, Yiwen NIH/CIT
▴ 360
0
votes
2
replies
1.1k
views
pdInfoBuilder -- MOUSEDIVm520650
Annotation
pdInfoBuilder
crlmm
Annotation
pdInfoBuilder
crlmm
updated 14.1 years ago by
James W. MacDonald
66k • written 14.1 years ago by
Ivanek, Robert
▴ 100
0
votes
3
replies
1.2k
views
pdInfoBuider: how to view SQL scheme?
pdInfoBuilder
pdInfoBuilder
updated 14.2 years ago by
Benilton Carvalho
★ 4.3k • written 14.2 years ago by
Guido Hooiveld
★ 4.0k
0
votes
8
replies
2.0k
views
pdInfoBuilder: invalid class object ("ScalarCharacter")
Annotation
oligo
pdInfoBuilder
Annotation
oligo
pdInfoBuilder
updated 14.3 years ago by
Vincent J. Carey, Jr.
6.7k • written 14.3 years ago by
Guido Hooiveld
★ 4.0k
0
votes
6
replies
1.7k
views
PdInfoBuilder for nimblegen array
Annotation
Organism
oligo
pdInfoBuilder
Annotation
Organism
oligo
pdInfoBuilder
updated 14.4 years ago by
Benilton Carvalho
★ 4.3k • written 14.4 years ago by
Alex Rodriguez
▴ 40
0
votes
0
replies
831
views
TilingFeatureSet
GO
pdInfoBuilder
GO
pdInfoBuilder
14.5 years ago
Diego Martinez
▴ 10
0
votes
1
reply
1.3k
views
Help with Oligo Package: Extracting and Graphing
Transcription
Normalization
Yeast
probe
affy
graph
tilingArray
oligo
pdInfoBuilder
Starr
updated 14.7 years ago by
Tobias Straub
▴ 430 • written 14.7 years ago by
Noah Dowell
▴ 410
0
votes
2
replies
1.7k
views
Affymetrix Mouse Promoter array / pdInfoBuilder
Annotation
oligo
pdInfoBuilder
Annotation
oligo
pdInfoBuilder
updated 14.7 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 14.7 years ago by
Hans-Ulrich Klein
▴ 330
0
votes
0
replies
1.0k
views
problem with pdInfoBuilder
Annotation
oligo
pdInfoBuilder
Annotation
oligo
pdInfoBuilder
15.1 years ago
Elsa Aguera
▴ 10
0
votes
0
replies
1.1k
views
[R] Need to build package for Affy HT HG-U133+ PM arrays
Annotation
GO
cdf
probe
affy
pdInfoBuilder
Annotation
GO
cdf
probe
affy
pdInfoBuilder
15.3 years ago
James W. MacDonald
66k
0
votes
3
replies
1.6k
views
Problem with RMA using pdInfoBuilder, oligo and limma
cdf
probe
affy
limma
pdInfoBuilder
cdf
probe
affy
limma
pdInfoBuilder
15.4 years ago
Anne-Marie Madore
▴ 30
0
votes
2
replies
1.7k
views
Custom CDF files
Annotation
GO
cdf
affy
PROcess
oligo
pdInfoBuilder
Annotation
GO
cdf
affy
PROcess
updated 15.6 years ago by
Mark Robinson
★ 1.1k • written 15.6 years ago by
Edward Oakeley
▴ 20
50 results • Page
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Comment: limma comparison for small sample size and how to get covariance matrix
by
Gordon Smyth
51k
Your MDS plot is better than before, but you are still not following the recommendation for making for making such plots given in the limma…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data
by
Elodie
• 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
Votes
Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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