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parallel
•
reset
0
votes
0
replies
870
views
set.seed in function vs clusterSetRNGStream: switching from one to another
parallel
seed
2.8 years ago
ZheFrench
▴ 60
0
votes
1
reply
1.4k
views
Running limma in parallel
parallel
R
limma
EWAS
updated 3.2 years ago by
Gordon Smyth
52k • written 3.2 years ago by
Lorenzo
• 0
3
votes
4
replies
1.9k
views
DiffBind (Error in if (DBA$config$parallelPackage))
parallel
R
DiffBind
updated 3.4 years ago by
Rory Stark
★ 5.2k • written 3.7 years ago by
eggrandio
• 0
1
vote
1
reply
1.9k
views
DiffBind error with background=TRUE in dba.normalize?
BiocParallel
DiffBind
parallel
updated 4.3 years ago by
Rory Stark
★ 5.2k • written 4.3 years ago by
Victor
• 0
7
votes
4
replies
2.1k
views
How does BiocParallel export variables to threads?
BiocParallel
SnowParam
parallel
updated 4.8 years ago by
Martin Morgan
25k • written 4.8 years ago by
gabriel.hoffman
▴ 170
0
votes
1
reply
729
views
Using multiple cores SCTensor package
SCTensor
Single Cell RNA Seq
Parallel
5.4 years ago
ieuangw
• 0
0
votes
4
replies
2.3k
views
DESeq2 using many cores despite parallel = FALSE
deseq2
parallel
updated 5.5 years ago by
Michael Love
43k • written 5.5 years ago by
symbiologist
• 0
6
votes
12
replies
2.5k
views
mclapply to loop over a GRangesList object
GenomicRanges
GRanges
GRangesList
parallel
mclapply
6.2 years ago
foehn
▴ 100
0
votes
0
replies
1.4k
views
miR2Pathway Finite Observations
pathway analysis
mirna
parallel
7.1 years ago
genomic8328
▴ 10
0
votes
1
reply
1.2k
views
DiffBind count warning
diffbind
parallel
updated 7.2 years ago by
Rory Stark
★ 5.2k • written 7.2 years ago by
ghosos
• 0
1
vote
5
replies
3.0k
views
DiffBind does not run in parallel
diffbind
parallel
biocparallel
updated 7.3 years ago by
Rory Stark
★ 5.2k • written 7.3 years ago by
eggrandio
• 0
3
votes
3
replies
1.9k
views
BiocParallel: zombie processes on FORK cluster
biocparallel
parallel
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
alserg
▴ 280
1
vote
0
replies
1.8k
views
Problems running oligo functions in parallel on a linux computer
biocparallel
oligo
rma
linux
parallel
7.3 years ago
s.munster
▴ 40
2
votes
10
replies
2.5k
views
Correct way to load a package inside bplapply function
parallel
biocparallel
7.7 years ago
felix.ernst
• 0
2
votes
3
replies
3.2k
views
BiocParallel::bplapply() performance with MulticoreParam() is worse than mclapply()
biocparallel
parallel
7.9 years ago
davide risso
▴ 980
1
vote
1
reply
1.8k
views
sva: Parallel execution of sva()-function fails.
sva
parallel
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
maltethodberg
▴ 180
4
votes
1
reply
1.6k
views
Parallel Join Excessively Slow
biocparallel
curatedmetagenomicdata
parallel
dplyr
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
Lucas Schiffer
▴ 240
1
vote
6
replies
2.0k
views
Multithreading problems with qalign
quasr
parallel
updated 8.4 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 8.4 years ago by
kirt.onthank
• 0
0
votes
1
reply
1.4k
views
BiocParallel and variable scope in child processes
parallel
variable scope
fork
BiocParallel
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
dan.gatti
• 0
0
votes
1
reply
1.4k
views
error when genomeFile too big when running Quasr on >3 clusters
quasr
parallel
cluster
9.2 years ago
rna seq
▴ 90
0
votes
9
replies
2.7k
views
problem using >3 clusters with Quasr
quasr
parallel
updated 9.2 years ago by
Martin Morgan
25k • written 9.2 years ago by
rna seq
▴ 90
2
votes
4
replies
1.7k
views
Running HTSFilter in paralell
htsfilter
parallel
updated 9.3 years ago by
andrea.rau
▴ 80 • written 9.3 years ago by
Richard Yanicky
▴ 10
0
votes
4
replies
1.7k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset
parallel
iterators
9.4 years ago
ben.ward
▴ 30
0
votes
3
replies
1.9k
views
DEXSeqHTML parallelization error
Parallel
DEXSeq
DEXSeqHTML
9.4 years ago
Neel Aluru
▴ 460
0
votes
1
reply
1.4k
views
Paralelization of maSigPro
maSigPro
parallel
9.6 years ago
gmdc
• 0
0
votes
1
reply
1.5k
views
News:
Course Announcement: Use R / Bioconductor for Sequence Analysis (Intermediate Course)
Course
RNA-Seq
Chip-seq
Parallel
News
10.1 years ago
Martin Morgan
25k
1
vote
1
reply
1.2k
views
trigger package fails at parallalization - Transcriptional Regulatory Inference from Genetics of ExpRession
trigger
parallel
processing
multicore
updated 10.5 years ago by
Valerie Obenchain
★ 6.8k • written 10.5 years ago by
affennacken
• 0
27 results • Page
1 of 1
Recent ...
Replies
Comment: CluserProfiler message "No gene can be mapped"
by
Carolina
• 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2
by
JKim
• 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE
by
James W. MacDonald
68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation
by
sergisayolspuig
▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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