Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
parallel
•
reset
0
votes
0
replies
854
views
set.seed in function vs clusterSetRNGStream: switching from one to another
parallel
seed
2.8 years ago
ZheFrench
▴ 60
0
votes
1
reply
1.4k
views
Running limma in parallel
parallel
R
limma
EWAS
updated 3.1 years ago by
Gordon Smyth
52k • written 3.1 years ago by
Lorenzo
• 0
3
votes
4
replies
1.8k
views
DiffBind (Error in if (DBA$config$parallelPackage))
parallel
R
DiffBind
updated 3.3 years ago by
Rory Stark
★ 5.2k • written 3.6 years ago by
eggrandio
• 0
1
vote
1
reply
1.9k
views
DiffBind error with background=TRUE in dba.normalize?
BiocParallel
DiffBind
parallel
updated 4.2 years ago by
Rory Stark
★ 5.2k • written 4.2 years ago by
Victor
• 0
7
votes
4
replies
2.1k
views
How does BiocParallel export variables to threads?
BiocParallel
SnowParam
parallel
updated 4.8 years ago by
Martin Morgan
25k • written 4.8 years ago by
gabriel.hoffman
▴ 170
0
votes
1
reply
724
views
Using multiple cores SCTensor package
SCTensor
Single Cell RNA Seq
Parallel
5.4 years ago
ieuangw
• 0
0
votes
4
replies
2.3k
views
DESeq2 using many cores despite parallel = FALSE
deseq2
parallel
updated 5.5 years ago by
Michael Love
43k • written 5.5 years ago by
symbiologist
• 0
6
votes
12
replies
2.4k
views
mclapply to loop over a GRangesList object
GenomicRanges
GRanges
GRangesList
parallel
mclapply
6.2 years ago
foehn
▴ 100
0
votes
0
replies
1.4k
views
miR2Pathway Finite Observations
pathway analysis
mirna
parallel
7.0 years ago
genomic8328
▴ 10
0
votes
1
reply
1.2k
views
DiffBind count warning
diffbind
parallel
updated 7.1 years ago by
Rory Stark
★ 5.2k • written 7.1 years ago by
ghosos
• 0
1
vote
5
replies
3.0k
views
DiffBind does not run in parallel
diffbind
parallel
biocparallel
updated 7.2 years ago by
Rory Stark
★ 5.2k • written 7.2 years ago by
eggrandio
• 0
3
votes
3
replies
1.9k
views
BiocParallel: zombie processes on FORK cluster
biocparallel
parallel
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
alserg
▴ 280
1
vote
0
replies
1.7k
views
Problems running oligo functions in parallel on a linux computer
biocparallel
oligo
rma
linux
parallel
7.3 years ago
s.munster
▴ 40
2
votes
10
replies
2.5k
views
Correct way to load a package inside bplapply function
parallel
biocparallel
7.6 years ago
felix.ernst
• 0
2
votes
3
replies
3.2k
views
BiocParallel::bplapply() performance with MulticoreParam() is worse than mclapply()
biocparallel
parallel
7.8 years ago
davide risso
▴ 980
1
vote
1
reply
1.8k
views
sva: Parallel execution of sva()-function fails.
sva
parallel
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
maltethodberg
▴ 180
4
votes
1
reply
1.5k
views
Parallel Join Excessively Slow
biocparallel
curatedmetagenomicdata
parallel
dplyr
updated 8.3 years ago by
Martin Morgan
25k • written 8.3 years ago by
Lucas Schiffer
▴ 240
1
vote
6
replies
2.0k
views
Multithreading problems with qalign
quasr
parallel
updated 8.3 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 8.3 years ago by
kirt.onthank
• 0
0
votes
1
reply
1.4k
views
BiocParallel and variable scope in child processes
parallel
variable scope
fork
BiocParallel
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
dan.gatti
• 0
0
votes
1
reply
1.4k
views
error when genomeFile too big when running Quasr on >3 clusters
quasr
parallel
cluster
9.2 years ago
rna seq
▴ 90
0
votes
9
replies
2.7k
views
problem using >3 clusters with Quasr
quasr
parallel
updated 9.2 years ago by
Martin Morgan
25k • written 9.2 years ago by
rna seq
▴ 90
2
votes
4
replies
1.6k
views
Running HTSFilter in paralell
htsfilter
parallel
updated 9.2 years ago by
andrea.rau
▴ 80 • written 9.2 years ago by
Richard Yanicky
▴ 10
0
votes
4
replies
1.7k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset
parallel
iterators
9.3 years ago
ben.ward
▴ 30
0
votes
3
replies
1.9k
views
DEXSeqHTML parallelization error
Parallel
DEXSeq
DEXSeqHTML
9.3 years ago
Neel Aluru
▴ 460
0
votes
1
reply
1.4k
views
Paralelization of maSigPro
maSigPro
parallel
9.5 years ago
gmdc
• 0
0
votes
1
reply
1.5k
views
News:
Course Announcement: Use R / Bioconductor for Sequence Analysis (Intermediate Course)
Course
RNA-Seq
Chip-seq
Parallel
News
10.1 years ago
Martin Morgan
25k
1
vote
1
reply
1.2k
views
trigger package fails at parallalization - Transcriptional Regulatory Inference from Genetics of ExpRession
trigger
parallel
processing
multicore
updated 10.5 years ago by
Valerie Obenchain
★ 6.8k • written 10.5 years ago by
affennacken
• 0
27 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 - human data, weird results, troubleshooting
by
bd2000
▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
James W. MacDonald
68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ATpoint
★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt
by
darylruiz6545
• 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash
by
Alex
• 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
what the test method for enrichGO in clusterProfiler?
Awards
• All
Popular Question
to
bd2000
▴ 30
Popular Question
to
shepherl
4.1k
Scholar
to
Michael Love
43k
Popular Question
to
Rob
• 0
Popular Question
to
Gordon Smyth
52k
Locations
• All
Montenegro,
9 minutes ago
United States,
16 minutes ago
Sweden,
18 minutes ago
United States,
34 minutes ago
France,
34 minutes ago
Traffic: 966 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6