Showing : pamr • reset
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ComBat covariate bias when building centroid based predictors
combat combat sva pamr limma design matrix sva
6.3 years ago jmsendoya • 0
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1.2k
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pamr
pamr pamr
updated 12.0 years ago by 67k • written 12.0 years ago by ▴ 10
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1.4k
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pam implementation
pamr pamr
updated 12.2 years ago by ▴ 280 • written 12.2 years ago by ★ 13k
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1.5k
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a bug in the function pamr.plotcen()
pamr pamr
updated 13.6 years ago by 25k • written 13.6 years ago by ▴ 90
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2.0k
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Error in pamr.predict
pamr pamr
updated 15.7 years ago by 16k • written 15.7 years ago by ▴ 10
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problem regarding runtime of pamr.cv
pamr pamr
updated 15.9 years ago by 67k • written 15.9 years ago by ▴ 170
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question about pamr.listgenes ....
pamr pamr
16.4 years ago ALok ▴ 170
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pamr.cv function
Cancer pamr Cancer pamr
16.9 years ago Patricia Greninger ▴ 10
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1.4k
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problem with pamr.listgenes in pamr package
pamr pamr
updated 17.6 years ago by ▴ 250 • written 17.6 years ago by ▴ 10
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1.6k
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Error of pamr.knnimpute
Microarray pamr Microarray pamr
updated 18.0 years ago by 67k • written 18.0 years ago by ▴ 10
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958
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magnifying genenames in pamr.plotcen()
pamr pamr
updated 18.8 years ago by 67k • written 18.8 years ago by ▴ 830
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pamr package - problem with pamr.cv() function
pamr pamr
18.8 years ago Vincent Negre ▴ 30
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1.4k
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How to write a text file of a pamr.confusion table ?
pamr pamr
updated 19.1 years ago by ▴ 250 • written 19.1 years ago by ▴ 540
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1.2k
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pamr and samr problems with windowsXP - pop-up windows
pamr pamr
updated 19.3 years ago by ★ 7.4k • written 19.3 years ago by ▴ 540
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1.3k
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pamr, samr and RWinEdt conficts - New editor req info
pamr pamr
updated 19.3 years ago by ★ 7.4k • written 19.3 years ago by ▴ 540
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Re: Re: segmentation error in pamr.knnimpute
pamr impute pamr impute
19.7 years ago Alice Le Bars ▴ 40
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914
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segmentation error in pamr.knnimpute
pamr pamr
updated 19.7 years ago by ★ 7.4k • written 19.7 years ago by ▴ 40
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1.7k
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pamr / R graphics recording
pamr pamr
updated 20.0 years ago by ▴ 40 • written 20.0 years ago by ▴ 130
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2
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1.8k
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Installation Problem on OS X
GO geneplotter graph Rgraphviz pamr globaltest GO geneplotter graph Rgraphviz pamr
updated 20.1 years ago by ▴ 680 • written 20.1 years ago by ▴ 10
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1.2k
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Application of PAMR from Affy to spot data
affy pamr affy pamr
updated 20.3 years ago by ★ 5.5k • written 20.3 years ago by ▴ 180
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1.7k
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pamr Error: each class must have >1 sample
GO pamr GO pamr
updated 20.4 years ago by ▴ 630 • written 20.4 years ago by ★ 1.4k
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pamr and sample.subset option
pamr pamr
20.5 years ago Dr Gyorffy Balazs ▴ 320
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1.3k
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Hierarchical clustering and shrinking centroids...
Classification Clustering pamr Classification Clustering pamr
updated 20.6 years ago by ★ 1.0k • written 20.6 years ago by ▴ 180
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Problem with PAM using R 1.9.0
pamr pamr
20.6 years ago Michelle Kittleson ▴ 10
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1.6k
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Bioconductor 1.4 released
Proteomics Annotation Normalization GO Cancer CGH pamr gcrma gpls affyPLM webbioc bim
updated 20.6 years ago by ★ 13k • written 20.6 years ago by ▴ 810
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Bug with R 1.9.0 beta (3/23) and PAMR?
pamr pamr
updated 20.8 years ago by ▴ 360 • written 20.8 years ago by ▴ 180
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wee query on pamr.knnimpute
pamr pamr
20.9 years ago Aedin Culhane ▴ 310
27 results • Page 1 of 1
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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0
Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…
Comment: PCA of different bacterial species by Jeremy • 0
Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…
Comment: RnBeads::combine() - error? by Urotree • 0
pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…
Comment: RnBeads::combine() - error? by Urotree • 0
![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…
Comment: RnBeads::combine() - error? by Urotree • 0
rnb.set.biseq <- RnBiseqSet( pheno = pheno, sites = sites, meth = meth, covg = NULL, # This can be NULL if coverage …
Votes
Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
scater/scran with TPMs from Salmon - counts?
A: Full length single-cell RNA-seq - tximport output for downstream analysis
Answer: Understanding tximport working with salmon outputs
Answer: enrichGOgradient color change
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