Showing : pamr • reset
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ComBat covariate bias when building centroid based predictors
combat combat sva pamr limma design matrix sva
6.6 years ago jmsendoya • 0
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1.2k
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pamr
pamr pamr
updated 12.3 years ago by 68k • written 12.3 years ago by ▴ 10
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1.4k
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pam implementation
pamr pamr
updated 12.4 years ago by ▴ 280 • written 12.4 years ago by ★ 13k
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1.6k
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a bug in the function pamr.plotcen()
pamr pamr
updated 13.8 years ago by 25k • written 13.8 years ago by ▴ 90
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2.1k
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Error in pamr.predict
pamr pamr
updated 16.0 years ago by 16k • written 16.0 years ago by ▴ 10
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1.4k
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problem regarding runtime of pamr.cv
pamr pamr
updated 16.1 years ago by 68k • written 16.1 years ago by ▴ 170
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1.1k
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question about pamr.listgenes ....
pamr pamr
16.7 years ago ALok ▴ 170
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1.3k
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pamr.cv function
Cancer pamr Cancer pamr
17.1 years ago Patricia Greninger ▴ 10
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1.4k
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problem with pamr.listgenes in pamr package
pamr pamr
updated 17.9 years ago by ▴ 250 • written 17.9 years ago by ▴ 10
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1.6k
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Error of pamr.knnimpute
Microarray pamr Microarray pamr
updated 18.2 years ago by 68k • written 18.2 years ago by ▴ 10
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986
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magnifying genenames in pamr.plotcen()
pamr pamr
updated 19.0 years ago by 68k • written 19.0 years ago by ▴ 830
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pamr package - problem with pamr.cv() function
pamr pamr
19.1 years ago Vincent Negre ▴ 30
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1.4k
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How to write a text file of a pamr.confusion table ?
pamr pamr
updated 19.4 years ago by ▴ 250 • written 19.4 years ago by ▴ 540
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1.2k
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pamr and samr problems with windowsXP - pop-up windows
pamr pamr
updated 19.6 years ago by ★ 7.4k • written 19.6 years ago by ▴ 540
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pamr, samr and RWinEdt conficts - New editor req info
pamr pamr
updated 19.6 years ago by ★ 7.4k • written 19.6 years ago by ▴ 540
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Re: Re: segmentation error in pamr.knnimpute
pamr impute pamr impute
19.9 years ago Alice Le Bars ▴ 40
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957
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segmentation error in pamr.knnimpute
pamr pamr
updated 19.9 years ago by ★ 7.4k • written 19.9 years ago by ▴ 40
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1.7k
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pamr / R graphics recording
pamr pamr
updated 20.2 years ago by ▴ 40 • written 20.2 years ago by ▴ 130
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2
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1.9k
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Installation Problem on OS X
GO geneplotter graph Rgraphviz pamr globaltest GO geneplotter graph Rgraphviz pamr
updated 20.4 years ago by ▴ 680 • written 20.4 years ago by ▴ 10
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1.2k
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Application of PAMR from Affy to spot data
affy pamr affy pamr
updated 20.5 years ago by ★ 5.5k • written 20.5 years ago by ▴ 180
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6
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1.8k
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pamr Error: each class must have >1 sample
GO pamr GO pamr
updated 20.7 years ago by ▴ 630 • written 20.7 years ago by ★ 1.4k
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871
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pamr and sample.subset option
pamr pamr
20.8 years ago Dr Gyorffy Balazs ▴ 320
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1.4k
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Hierarchical clustering and shrinking centroids...
Classification Clustering pamr Classification Clustering pamr
updated 20.9 years ago by ★ 1.0k • written 20.9 years ago by ▴ 180
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Problem with PAM using R 1.9.0
pamr pamr
20.9 years ago Michelle Kittleson ▴ 10
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1.7k
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Bioconductor 1.4 released
Proteomics Annotation Normalization GO Cancer CGH pamr gcrma gpls affyPLM webbioc bim
updated 20.9 years ago by ★ 13k • written 20.9 years ago by ▴ 810
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Bug with R 1.9.0 beta (3/23) and PAMR?
pamr pamr
updated 21.0 years ago by ▴ 360 • written 21.0 years ago by ▴ 180
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999
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wee query on pamr.knnimpute
pamr pamr
21.1 years ago Aedin Culhane ▴ 310
27 results • Page 1 of 1
Recent ...
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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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