Showing : pairwisealignment • reset
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Question about converting SAM alignment file data to a visual text alignment (e.g., resembling blastn alignment)
SAM samtools pairwisealignment alignment blastn
6.7 years ago ktehmsen • 0
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How to find multiple overlaps with pairwiseAlignment()?
biostrings pairwisealignment
updated 7.2 years ago by 16k • written 7.2 years ago by ▴ 10
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1.8k
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Query with Biostrings pairwise alignment output positon
biostrings alignment pairwisealignment
updated 7.4 years ago by 16k • written 7.4 years ago by • 0
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Calculate the number of SNP differences between sequences in multiple alignment
pairwisealignment SNP dnasequence
8.2 years ago lordbleys • 0
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Translate to aminoacid, align pairwise and un-translate back to DNA
translation pairwisealignment
8.7 years ago igferres • 0
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1.1k
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Mapping sequence features to alignments
pairwisealignment indel
updated 8.8 years ago by 16k • written 8.8 years ago by ▴ 10
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1.8k
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pairwiseAlignments coordinate mapping?
biostrings pairwisealignment
updated 8.9 years ago by 16k • written 8.9 years ago by ★ 13k
2
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1
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1.3k
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Error in score() function on pairwiseAlignment()
biostrings pairwisealignment
updated 9.0 years ago by 4.1k • written 9.0 years ago by • 0
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1.5k
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pairwiseAlignment() - Similarity NA% ?
biostrings pairwisealignment
updated 9.5 years ago by 16k • written 9.5 years ago by • 0
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indels located at the edges of subject and Biostrings pairwiseAlignment function
pairwisealignment biostrings
9.6 years ago vincent.plagnol ▴ 10
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inconsistent pairwiseAlignment behaviour (Biostrings) with multiple alignments with identical scores
biostrings pairwisealignment
9.6 years ago vincent.plagnol ▴ 10
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5
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3.2k
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global alignment in Biostrings , Memory fails when seq. lengths around 50K bp
Biostrings pairwiseAlignment
updated 10.5 years ago by 16k • written 10.5 years ago by ▴ 120
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Comment: Differing results with DESeq2 by JKim • 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0
That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…
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