Bioconductor Pairwisealignment

Showing : pairwisealignment • reset

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SAM samtools pairwisealignment alignment blastn

6.5 years ago ktehmsen • 0

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biostrings pairwisealignment

updated 7.0 years ago by Hervé Pagès 16k • written 7.0 years ago by kgorczak ▴ 10

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biostrings alignment pairwisealignment

updated 7.1 years ago by Hervé Pagès 16k • written 7.1 years ago by dhwani2410 • 0

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pairwisealignment SNP dnasequence

8.0 years ago lordbleys • 0

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translation pairwisealignment

8.5 years ago igferres • 0

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1.1k

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pairwisealignment indel

updated 8.6 years ago by Hervé Pagès 16k • written 8.6 years ago by oliwindram ▴ 10

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1.7k

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biostrings pairwisealignment

updated 8.7 years ago by Hervé Pagès 16k • written 8.7 years ago by Steve Lianoglou ★ 13k

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1.2k

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biostrings pairwisealignment

updated 8.7 years ago by shepherl 4.1k • written 8.7 years ago by jdydu • 0

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1.4k

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biostrings pairwisealignment

updated 9.3 years ago by Hervé Pagès 16k • written 9.3 years ago by boris.steipe • 0

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1.4k

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pairwisealignment biostrings

9.3 years ago vincent.plagnol ▴ 10

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biostrings pairwisealignment

9.4 years ago vincent.plagnol ▴ 10

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3.1k

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Biostrings pairwiseAlignment

updated 10.2 years ago by Hervé Pagès 16k • written 10.2 years ago by branislav misovic ▴ 120

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Comment: Identifying potentially associated gene set to drug response using GSVA by kl2023gege • 0

Thanks for sharing. You gotta check out Sprunki Phase Games on [Sprunki Phase](https://sprunkiphase.net). It's a wild ride of tunes and tw…

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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