Bioconductor PairwiseAlignment

Showing : pairwiseAlignment • reset

votes

replies

1.3k

views

SAM samtools pairwisealignment alignment blastn

6.3 years ago ktehmsen • 0

votes

replies

1.7k

views

biostrings pairwisealignment

updated 6.8 years ago by Hervé Pagès 16k • written 6.8 years ago by kgorczak ▴ 10

votes

replies

1.6k

views

biostrings alignment pairwisealignment

updated 7.0 years ago by Hervé Pagès 16k • written 7.0 years ago by dhwani2410 • 0

vote

replies

3.9k

views

pairwisealignment SNP dnasequence

7.8 years ago lordbleys • 0

votes

replies

1.1k

views

translation pairwisealignment

8.3 years ago igferres • 0

votes

1.0k

views

pairwisealignment indel

updated 8.4 years ago by Hervé Pagès 16k • written 8.4 years ago by oliwindram ▴ 10

votes

replies

1.6k

views

biostrings pairwisealignment

updated 8.5 years ago by Hervé Pagès 16k • written 8.5 years ago by Steve Lianoglou ★ 13k

votes

1.2k

views

biostrings pairwisealignment

updated 8.6 years ago by shepherl 4.1k • written 8.6 years ago by jdydu • 0

votes

1.4k

views

biostrings pairwisealignment

updated 9.1 years ago by Hervé Pagès 16k • written 9.1 years ago by boris.steipe • 0

votes

replies

1.3k

views

pairwisealignment biostrings

9.2 years ago vincent.plagnol ▴ 10

votes

replies

1.8k

views

biostrings pairwisealignment

9.2 years ago vincent.plagnol ▴ 10

votes

replies

3.0k

views

Biostrings pairwiseAlignment

updated 10.1 years ago by Hervé Pagès 16k • written 10.1 years ago by branislav misovic ▴ 120

12 results • Page 1 of 1

Recent ...

Replies

Comment: Crossover design with limma by SamGG ▴ 360

IMHO, here are the missing annotations treatmentdrug_orderDrugPlac - treatmentplacebo_orderDrugPlac, # effect of drug for the Drug…

Answer: What type of counts data to import for performing Isoform analysis in edgeR by ATpoint ★ 4.5k

You don't need any of these files. You need the `catchSalmon` function which reads `quant.sf` and the inferential (Bootstrap/Gibbs) replica…

Comment: makeContrastsDream for Interaction by abadgerw • 0

Thank you! I will try this out.

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

Thanks, @gabrielhoffman The data is actually proteomics so it is intensity data which is why I did not use voom but rather ran ebayes wi…

Comment: ANOVA like approach of edgeR by Gordon Smyth 52k

To identify common upregulated or downregulated genes, you would need to test for media condition contrasts for each cell type separately, …

Votes

Comment: Crossover design with limma

Answer: DESeq2 normalization vs VST vs rlog

Comment: makeContrastsDream for Interaction

Answer: Limma- Print-tip loess normalisation-printer layout information does not match M

Awards • All

Popular Question to Marek Gierlinski ▴ 30

Scholar to Gordon Smyth 52k

Popular Question to mohammedtoufiq91 ▴ 10

Popular Question to Hans-Ulrich Klein ▴ 330