Bioconductor Paired-end reads

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diffbind paired-end reads

updated 4.2 years ago by Rory Stark ★ 5.2k • written 8.0 years ago by rbronste ▴ 60

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paired-end reads bam file

7.2 years ago ioannis.vardaxis ▴ 30

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dnaseq rtracklayer paired-end reads

7.6 years ago zwfanwz678 • 0

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summarizeoverlaps paired-end reads readGAlignmentPairs

7.8 years ago teresati ▴ 10

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quasr quasr error paired-end reads rnaseq

8.0 years ago guillaume.dachy • 0

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quasr paired-end reads rnaseq

8.0 years ago guillaume.dachy • 0

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quasr rnaseq paired-end reads

8.1 years ago guillaume.dachy • 0

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rsamtools paired-end reads countbam

updated 8.3 years ago by Martin Morgan 25k • written 8.3 years ago by Dario Strbenac ★ 1.5k

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Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Michael, Thank you very much!

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

Yes, with the knowledge that, it is expected to be underpowered.

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?

Answer: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

The short answer is yes, you can use even a single sample to estimate the batch effect (and therefore control for it in otherwise confounde…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by alserg ▴ 280

`NES > 0` means that your gene set has more genes with positive logFC/stat. In your case these genes should be up in Subset1. However, if y…

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