Bioconductor Paired analysis

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rna seq trimmomatic trimming adapter trimming paired analysis

5.6 years ago Mozart ▴ 30

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1.8k

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limma technical replicates biological replicates paired analysis

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by paul.alto ▴ 50

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864

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edger rnaseq paired analysis design matrix

5.7 years ago svlachavas ▴ 840

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872

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limma paired analysis

updated 5.9 years ago by Gordon Smyth 52k • written 5.9 years ago by annadv77 • 0

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1.2k

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DESEq2 paired analysis factor levels

updated 6.7 years ago by Michael Love 43k • written 6.7 years ago by luisa.bresadola • 0

5 results • Page 1 of 1

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Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

Answer: EuroBioC2023 abstract submission closing soon! by excess.gecko.shso • 0

Don't miss out! EuroBioC2023 abstract submissions are nearing the deadline. Sharpen your scientific [Wordle Game][1] skills and submit your…

Answer: EuroBioC2024 abstract submission is open! by excess.gecko.shso • 0

EuroBioC2024 abstract submissions are now open! Join the Oxford conference from Sep 4-6. Submit your abstract by April 26 for short talks, …

Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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Teacher to dsull ▴ 40