Bioconductor PRoloc

Showing : pRoloc • reset

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901

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pRoloc proteomics Spatial Proteomics MassSpectrometry

22 months ago Laurent Gatto 1.6k

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870

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pRoloc phenoDisco

updated 4.9 years ago by Laurent Gatto 1.6k • written 4.9 years ago by dave.g.rattray • 0

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1.2k

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pRoloc phenoDisco fcol

updated 5.4 years ago by Laurent Gatto 1.6k • written 5.4 years ago by johnscrn • 0

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1.6k

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pRoloc machine learning cholesky

5.8 years ago robinkretz • 0

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1.6k

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bioconductor proloc

updated 6.8 years ago by Laurent Gatto 1.6k • written 6.8 years ago by sjp221 • 0

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1.8k

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proloc proteomics msnset

6.9 years ago moldach ▴ 20

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1.5k

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pRoloc annotation subcellular location

updated 6.9 years ago by Laurent Gatto 1.6k • written 6.9 years ago by moldach ▴ 20

7 results • Page 1 of 1

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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