Bioconductor P-value

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814

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outputresult DEqMS sca.adj.pval error p-value

2.5 years ago Bastian • 0

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1.3k

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one-sided nbinomWaldTest p-value meta-analysis DESeq2

updated 3.6 years ago by Michael Love 43k • written 3.6 years ago by nash12 • 0

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5.1k

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gwas genesis p-value q-q-plot

updated 4.2 years ago by Anna • 0 • written 5.4 years ago by solanum • 0

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2.6k

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p-value FDR DEP

updated 3.8 years ago by António Miguel de Jesus Domingues ▴ 510 • written 4.4 years ago by Alexei Leliavski ▴ 60

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2.0k

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statistical significance p-value q-value FDR qvalue

5.3 years ago manozawa ▴ 10

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1.3k

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ihw p-value multiple hypothesis

updated 5.9 years ago by Wolfgang Huber ★ 13k • written 5.9 years ago by xiaotong.yao23 ▴ 10

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1.9k

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edgeR FDR p-value Benjamini-Hochberg Differential Analysis

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by ilovesuperheroes1993 • 0

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2.1k

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deseq2 p-value continuous deseq

6.2 years ago ariel ▴ 20

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2.4k

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DESeq2 nbinomWaldTest one-sided p-value

updated 6.6 years ago by Michael Love 43k • written 6.6 years ago by t.kuilman ▴ 170

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1.3k

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weighted correlation network analysis WGCNA P-Value

6.7 years ago modarzi ▴ 10

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13k

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FDR p-value DESeq RNA-Seq

updated 7.4 years ago by Wade Davis ▴ 60 • written 7.9 years ago by yjiangnan ▴ 10

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1.2k

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Gostats p-value

7.8 years ago salamandra ▴ 20

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1.8k

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deseq2 normalization p-value metaseq

updated 7.8 years ago by Ryan C. Thompson ★ 7.9k • written 7.8 years ago by ed_isfahani • 0

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4.3k

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limma microarray fdr p-value results

updated 7.9 years ago by Aaron Lun ★ 28k • written 7.9 years ago by bhgyu ▴ 30

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2.4k

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diffbind p-value differential binding analysis fold enrichment values using diffbind

updated 8.9 years ago by Rory Stark ★ 5.2k • written 8.9 years ago by alisonhanh.nguyen • 0

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15k

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deseq differential gene expression statistics p-value

updated 4.1 years ago by Kai_Qi ▴ 20 • written 9.2 years ago by Giard ▴ 30

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5.1k

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p-value detection

updated 9.2 years ago by Gordon Smyth 52k • written 9.2 years ago by Eleni Christodoulou ▴ 150

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2.7k

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rankprod p-value

updated 9.8 years ago by James W. MacDonald 68k • written 9.8 years ago by brilladine • 0

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2.5k

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p-value medips MACS

updated 9.9 years ago by Lukas Chavez ▴ 570 • written 9.9 years ago by tptacek3050 • 0

19 results • Page 1 of 1

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Comment: How to convert transcript counts to gene counts in R? by ben • 0

Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/

Answer: EuroBioC2024 abstract submission is open! by Ali • 0

[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…

Answer: ROAST for small sets by Gordon Smyth 52k

The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…

Comment: FlowSOM library requires igraph but igraph does not install by Szabolcs • 0

The R/igraph Installation FAQ covers most issues: https://r.igraph.org/articles/installation-troubleshooting.html

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20

Thank you very much for the vis suggestion!

Votes

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

Comment: edgeR::cpm() results in negative values from raw counts of 0

Awards • All

Scholar to Gordon Smyth 52k