Bioconductor P-value

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794

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outputresult DEqMS sca.adj.pval error p-value

2.4 years ago Bastian • 0

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1.3k

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one-sided nbinomWaldTest p-value meta-analysis DESeq2

updated 3.5 years ago by Michael Love 43k • written 3.5 years ago by nash12 • 0

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5.0k

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gwas genesis p-value q-q-plot

updated 4.1 years ago by Anna • 0 • written 5.3 years ago by solanum • 0

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2.5k

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p-value FDR DEP

updated 3.7 years ago by António Miguel de Jesus Domingues ▴ 510 • written 4.3 years ago by Alexei Leliavski ▴ 60

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1.9k

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statistical significance p-value q-value FDR qvalue

5.2 years ago manozawa ▴ 10

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1.2k

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ihw p-value multiple hypothesis

updated 5.7 years ago by Wolfgang Huber ★ 13k • written 5.7 years ago by xiaotong.yao23 ▴ 10

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1.7k

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edgeR FDR p-value Benjamini-Hochberg Differential Analysis

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by ilovesuperheroes1993 • 0

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2.1k

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deseq2 p-value continuous deseq

6.0 years ago ariel ▴ 20

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2.3k

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DESeq2 nbinomWaldTest one-sided p-value

updated 6.5 years ago by Michael Love 43k • written 6.5 years ago by t.kuilman ▴ 170

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1.2k

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weighted correlation network analysis WGCNA P-Value

6.6 years ago modarzi ▴ 10

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12k

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FDR p-value DESeq RNA-Seq

updated 7.2 years ago by Wade Davis ▴ 60 • written 7.8 years ago by yjiangnan ▴ 10

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1.2k

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Gostats p-value

7.6 years ago salamandra ▴ 20

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1.8k

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deseq2 normalization p-value metaseq

updated 7.7 years ago by Ryan C. Thompson ★ 7.9k • written 7.7 years ago by ed_isfahani • 0

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4.0k

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limma microarray fdr p-value results

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by bhgyu ▴ 30

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2.4k

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diffbind p-value differential binding analysis fold enrichment values using diffbind

updated 8.7 years ago by Rory Stark ★ 5.2k • written 8.7 years ago by alisonhanh.nguyen • 0

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14k

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deseq differential gene expression statistics p-value

updated 4.0 years ago by Kai_Qi ▴ 20 • written 9.1 years ago by Giard ▴ 30

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5.0k

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p-value detection

updated 9.1 years ago by Gordon Smyth 52k • written 9.1 years ago by Eleni Christodoulou ▴ 150

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2.6k

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rankprod p-value

updated 9.7 years ago by James W. MacDonald 68k • written 9.7 years ago by brilladine • 0

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2.5k

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p-value medips MACS

updated 9.7 years ago by Lukas Chavez ▴ 570 • written 9.7 years ago by tptacek3050 • 0

19 results • Page 1 of 1

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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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