Showing : overlap • reset
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Properly constructing a hypergeometric test
overrepresentation overlap R hypergeometric
updated 2.6 years ago by ★ 4.8k • written 2.6 years ago by ▴ 180
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How to overlap heatmaps on Gviz?
Givz heatmap overlap combine information
4.9 years ago kris.petrini • 0
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How to extract positions present in one genomic ranges object and not the other?
genomicranges r overlap
updated 5.0 years ago by ★ 4.0k • written 5.0 years ago by • 0
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GenomicRanges: identify overlapping regions, get intersection between each overlapping pair and add gene coordinates (start, end, strand and ids)
genomicranges overlap intersect findoverlaps
7.3 years ago Caroline Grisbach Meissner ▴ 10
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WGCNA multiple data sets overlapping analysis
wgcna multiple data sets overlap
updated 7.9 years ago by ★ 3.0k • written 7.9 years ago by ▴ 60
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Obtain the specific range that overlap
overlap genomicranges range
8.4 years ago julrodr80 ▴ 30
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How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures genomicranges cds overlap
updated 9.4 years ago by ★ 11k • written 9.4 years ago by ▴ 10
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How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures genomicranges cds overlap
updated 3.4 years ago by • 0 • written 9.4 years ago by ▴ 10
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Overlap the snps
overlap snps granges iranges
updated 10.6 years ago by ★ 11k • written 10.6 years ago by ▴ 10
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Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender by donnycrimson • 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by donnycrimson • 0
Have you considered streamlining how you handle data input to mitigate these issues. It might help to define the parameters more strictly …
Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2 by JKim • 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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