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cds
•
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0
votes
4
replies
1.7k
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Merging each element of a list of Genomic range
txdb
granges
cds
orf
R
updated 6.0 years ago by
James W. MacDonald
66k • written 6.0 years ago by
q.thomas
• 0
1
vote
3
replies
1.4k
views
How can I use Annotatr on CDS?
Annotatr
CDS
Exon
UTR
updated 6.3 years ago by
rcavalca
▴ 140 • written 6.3 years ago by
xie186
• 0
2
votes
1
reply
1.6k
views
Extracting UTRs from exon and CDS data
genomeintervals
UTRs
exons
CDS
GenomicRanges
updated 6.8 years ago by
Michael Lawrence
★ 11k • written 6.8 years ago by
rubi
▴ 110
3
votes
1
reply
1.9k
views
Extracting Coordinates of startcodon from Grangeslist
biomart
bioconductor
grangeslist
cds
ribosome profiling
updated 7.0 years ago by
Hervé Pagès
16k • written 7.0 years ago by
Walter F. Baumann
▴ 10
2
votes
2
replies
2.6k
views
Get the genomic coordinates for the coding sequence (CDS) of a gene
genomicfeatures
txdb.hsapiens.ucsc.hg19.knowngene
cds
7.7 years ago
madsheilskov
▴ 10
0
votes
3
replies
1.9k
views
how to get complete cds annotation information ?
cds
8.5 years ago
KB
▴ 50
2
votes
10
replies
2.2k
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures
genomicranges
cds
overlap
updated 8.5 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
madsheilskov
▴ 10
0
votes
1
reply
1.4k
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures
genomicranges
cds
overlap
updated 2.5 years ago by
balajee
• 0 • written 8.5 years ago by
madsheilskov
▴ 10
8 results • Page
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Comment: How to compare subset of samples from VCF files
by
Gordon Smyth
50k
Welcome to Bioconductor support. Did you know that you can delete your old postings if they haven't received an answer yet? Instead of ap…
Comment: How to compare subset of samples from VCF files
by
Marco
• 0
Here's the vcf file as code block ``` ##fileformat=VCFv4.2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth"> ##FOR…
Comment: Gviz and custom database
by
James W. MacDonald
66k
The vignette for `Gviz` says you can use a `DNAStringSet`, generated using `Biostrings`. Have you tried that?
Comment: Gviz and custom database
by
luigi.faino
• 0
Dear, this is not what I need. I need to transform a fasta sequence in a genome track usable in Gviz. L
Answer: Gviz and custom database
by
James W. MacDonald
66k
https://bioconductor.org/packages/release/bioc/vignettes/txdbmaker/inst/doc/txdbmaker.html
Votes
Answer: makeExampleDESeqDataSet using pilot data
Answer: Checking/updating package versions
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
convert data frame of Entrez IDs to Gene Symbols
Answer: LRT, pairwise comparisons and p-value adjustment
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