Bioconductor Outlier

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633

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Outlier

updated 23 months ago by ATpoint ★ 4.7k • written 23 months ago by sanchita.bhattacharya • 0

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1.7k

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DESeq2 RNAseq outlier

updated 2.0 years ago by ATpoint ★ 4.7k • written 2.0 years ago by James • 0

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2.4k

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RNAseq DESeq2 outlier counts DE analysis

updated 4.8 years ago by Kevin Blighe ★ 4.0k • written 4.8 years ago by DcL-A • 0

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1000

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deseq2 outlier normalization removal

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by knholm • 0

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7.6k

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deseq2 rnaseq PCA hierarchical clustering outlier

8.2 years ago wd ▴ 30

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1.8k

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rnaseq outlier statistics batch effect

updated 8.7 years ago by Gordon Smyth 52k • written 8.7 years ago by grastalt27 • 0

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1.5k

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arrayQualityMetrics Microarray Outlier

updated 9.3 years ago by Wolfgang Huber ★ 13k • written 9.3 years ago by horcsct ▴ 10

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4.8k

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DESeq2 outlier RNASeq

updated 10.2 years ago by Michael Love 43k • written 10.2 years ago by kenneth.daily • 0

8 results • Page 1 of 1

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Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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Popular Question to Mark Dunning ★ 1.1k