Showing : orgdb • reset
1
vote
6
replies
630
views
Error for AnnotationForge makeOrgPackageFromNCBI function
OrgDb AnnotationForge
5 months ago • updated 3 months ago Gayatri • 0
2
votes
2
replies
592
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 5 months ago by 67k • written 5 months ago by • 0
2
votes
2
replies
595
views
Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
written 6 months ago by ▴ 10
1
vote
3
replies
635
views
Pan-organism OrgDb database, Accession number translated to organism name in R
AccNo OrgDb convert Organismname RStudio
updated 10 months ago by 67k • written 10 months ago by • 0
2
votes
4
replies
766
views
Need help generating BSgenome and orgdb
OrgDb BSgenome
11 months ago • updated 7 months ago mat149 ▴ 80
0
votes
0
replies
2.0k
views
Error: package or namespace load failed for 'AnnotationDbi' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
OrgDb
21 months ago hswdl • 0
1
vote
7
replies
1.8k
views
Adding geneID to list of gene locus IDs
cluster OrgDb clusterProfiler
written 22 months ago by • 0
0
votes
4
replies
1.7k
views
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
OrgDb
21 months ago hendrikwenneker • 0
1
vote
9
replies
1.9k
views
Why is OrgDb linked to specific biocversion? / How to analyze old datasets?
BiocVersion OrgDb clusterProfiler
23 months ago MK • 0
0
votes
1
reply
820
views
Share Annotation Packages
OrgDb AnnotationDbi
updated 23 months ago by 4.0k • written 23 months ago by • 0
0
votes
1
reply
1.4k
views
Exporting org.*.*.db Gene Ontology annotations to excel sheet or txt
OrgDb RNASeq
updated 2.6 years ago by 67k • written 2.6 years ago by • 0
0
votes
7
replies
5.2k
views
how to create an OrgDb package?
orgDb annotationForge
updated 2.5 years ago by • 0 • written 2.9 years ago by • 0
1
vote
2
replies
1.7k
views
Translating Solanum lycopersum gene IDs to ENTREZIDs for GO enrichment analysis using clusterProfiler
OrgDb Bioconductor AnnotationHub clusterProfiler
updated 3.4 years ago by ★ 4.1k • written 3.4 years ago by • 0
0
votes
0
replies
1.0k
views
Adding to Pseudomonas aeruginosa PAO1 to OrgDb
OrgDb
3.4 years ago Thomas.H.Hampton • 0
2
votes
3
replies
2.0k
views
Gene Ontology Analysis of DE Genes
clusterProfiler AnnotationDbi OrgDb goseq
updated 3.7 years ago by 67k • written 3.7 years ago by ▴ 30
0
votes
2
replies
1.5k
views
Can't select GO from AnnotationHub orgDB packages
GO.db AnnotationHub OrgDB
updated 4.2 years ago by 67k • written 4.2 years ago by ★ 2.0k
3
votes
6
replies
2.6k
views
How to manage AnnotationHub snapshots / most OrgDB are missing?
AnnotationHub OrgDb snapshotDate
updated 2.2 years ago by 4.0k • written 4.4 years ago by ★ 2.0k
0
votes
34
replies
9.1k
views
Error: installation of package org.Mm.eg.db had non-zero exit status
OrgDb
updated 4.4 years ago by • 0 • written 4.9 years ago by • 0
7
votes
44
replies
6.2k
views
OrgDB download failed via AnnotationHub
annotationhub orgdb
updated 5.2 years ago by 4.0k • written 5.3 years ago by ▴ 10
3
votes
6
replies
2.1k
views
How to create a customized OrgDb in order to perform kegga analysis?
limma kegga orgdb
updated 6.6 years ago by 51k • written 6.6 years ago by • 0
0
votes
1
reply
1.5k
views
News: OrgDbs in AnnotationHub
annotationhub orgdb News
6.9 years ago shepherl 4.0k
0
votes
0
replies
1.5k
views
News: OrgDb and TxDb packages have been added to AnnotationHub for Bioc 3.6
orgdb txdb bioconductor annotation annotationhub News
6.9 years ago shepherl 4.0k
0
votes
6
replies
1.8k
views
Why are important organisms missing from AnnotationHub. Example query(hub, "Zea")
orgdb annotationhub
7.1 years ago slbai01 • 0
0
votes
2
replies
2.2k
views
add annotation features to BSgenome or txdb package
bsgenome txdb annotation orgdb
7.2 years ago Didi ▴ 10
1
vote
0
replies
1.3k
views
News: complete set of OrgDb packages have been added to AnnotationHub
bioconductor annotationhub orgdb News
7.3 years ago shepherl 4.0k
0
votes
4
replies
1.5k
views
Annotation Hub object no longer present
Orgdb
7.8 years ago anamabrantesc • 0
2
votes
12
replies
2.5k
views
ann_objs$MAPCOUNTS <- AnnotationDbi:::createMAPCOUNTS(dbconn, prefix) does not work well
annotation orgdb
8.6 years ago knishida ▴ 20
3
votes
13
replies
2.9k
views
Org.db: why a supposed unique key (ID) has multiple entries?
annotationhub organismdb orgdb unsupported organisms
updated 8.7 years ago by ★ 6.8k • written 8.7 years ago by ★ 4.1k
0
votes
5
replies
2.0k
views
Why are important organisms missing from AnnotationHub() $rdataclass == "OrgDb"?
annotationhub orgdb
updated 8.9 years ago by ★ 6.8k • written 8.9 years ago by ▴ 10
0
votes
0
replies
1.3k
views
Error in makeOrgPackageFromNCBI
GO OrgDb annotate GOstats GO OrgDb annotate GOstats
11.3 years ago Chris Whelan ▴ 60
0
votes
6
replies
1.6k
views
Creating an OrganismDbi package with a few transcript annotations
OrgDb OrganismDbi OrgDb OrganismDbi
updated 11.4 years ago by 25k • written 11.4 years ago by ★ 11k
0
votes
1
reply
1.8k
views
problem creating own org.Ss.eg.db
Annotation GO Organism OrgDb Annotation GO Organism OrgDb
updated 12.6 years ago by ★ 4.1k • written 12.6 years ago by ★ 7.2k
32 results • Page 1 of 1
Recent ...
Replies
Comment: How should I run ssGSEA Hallmark Enrichment Analysis? by Ginny • 0
I think the other side of this question is that the non protein coding genes would be in the "background", they would influence the ranking…
Comment: ISO a solution to rank-order introns by transcript by James W. MacDonald 67k
There's an error in the last line. Note that `sapply(lengths(z), seq_len)` will return a `list` because the lengths vary. We need a vector,…
Comment: BiomaRt - improved access to Ensembl ? by Mike Smith ★ 6.5k
Why do you want to use `useMart()` rather than `useEnsembl()`? They are essentially the same (`useEnsembl()` will eventually call `useMart(…
Comment: Installing Bioconductor packages in Docker by devarti.mahakalkar • 0
I have installed BiocManager on my base image rather than having it as base image. RUN Rscript -e "install.packages('BiocManager', re…
Comment: Meta-analysis on RNA-seq data sets by Travis • 0
Thank you for your suggestions and explanation of your approach!
Votes
Answer: ISO a solution to rank-order introns by transcript
Answer: ISO a solution to rank-order introns by transcript
Answer: Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're c
Answer: Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're c
Answer: addPatternDensity in 'qsea' takes too much time
Awards • All
Popular Question to Robert Castelo ★ 3.4k
Scholar to James W. MacDonald 67k
Popular Question to mat149 ▴ 80
Popular Question to Gordon Smyth 51k
Popular Question to Kevin • 0
Locations • All
United States, 9 minutes ago
WEHI, Melbourne, Australia, 10 minutes ago
Australia, 30 minutes ago
United States, 54 minutes ago
EMBL Heidelberg, 1 hour ago
Traffic: 450 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6