Bioconductor Organismdb

Showing : organismdb • reset

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2.0k

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OrganismDb AnnotationForge

10 months ago • updated 9 months ago Ozan • 0

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2.1k

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clusterProfiler OrganismDb

updated 16 months ago by Guido Hooiveld ★ 4.1k • written 16 months ago by Aastha Kapoor • 0

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AnnotationForge OrganismData OrganismDb

21 months ago abhisek001 • 0

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annotation organismdb

updated 8.6 years ago by Martin Morgan 25k • written 8.6 years ago by Guido Hooiveld ★ 4.1k

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3.3k

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annotationhub organismdb orgdb unsupported organisms

updated 9.2 years ago by Valerie Obenchain ★ 6.8k • written 9.2 years ago by Guido Hooiveld ★ 4.1k

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promoter granges refseq ucsc organismdb

updated 9.4 years ago by Robert Castelo ★ 3.4k • written 9.4 years ago by efoss ▴ 10

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2.8k

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GO OrganismDb ggbio GO OrganismDb ggbio

updated 10.3 years ago by dalloliogm ▴ 50 • written 10.6 years ago by Georg Otto ▴ 120

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annotationdbi annotation organismdb loadnamespace

10.4 years ago milorobertsmith • 0

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go annotation organismdb

updated 10.5 years ago by James W. MacDonald 68k • written 10.5 years ago by Guido Hooiveld ★ 4.1k

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organismdb annotationdbi annotationforge

updated 10.5 years ago by Marc Carlson ★ 7.2k • written 10.5 years ago by artur ▴ 80

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1.7k

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Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome MEDIPS

updated 11.3 years ago by Matthias Lienhard ▴ 280 • written 11.3 years ago by Hervé Pagès 16k

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2.2k

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Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome GO

11.3 years ago Hervé Pagès 16k

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2.3k

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GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome rtracklayer MEDIPS

11.3 years ago Hervé Pagès 16k

13 results • Page 1 of 1

Recent ...

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

Votes

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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