Showing : onechannelgui • reset
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News: Initial List of Deprecated Packages for Bioc3.6
deprecate EWCE MAIT stepwiseCM onechannelgui News
7.4 years ago shepherl 4.1k
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problem with oneChannelGUI
onechannelgui exon array analysis R
9.2 years ago anna.dolnik • 0
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3
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12k
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How to combine expression values of multiple probes for one gene
probe convert geneexpression onechannelgui
updated 9.4 years ago by ▴ 840 • written 9.4 years ago by ▴ 10
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News: RNAseq data analysis courses: Torino (Italy) : Beginner course March 17-19 2015 & Advance Course April 14-16 2015
rnaseq mirna onechannelgui chimera News
10.0 years ago raffaele calogero ▴ 500
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oneChannelGUI - setting APT tools folder
software error microarray onechannelgui
10.2 years ago nextgenseq.bioinfo • 0
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Introductory workshop for RNA-seq 27-28 March 2013, Torino, Italy
Network oneChannelGUI Network oneChannelGUI
11.9 years ago raffaele calogero ▴ 500
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problems with oneChannelGUI
affylmGUI oneChannelGUI ASSIGN affylmGUI oneChannelGUI ASSIGN
12.7 years ago Manuela Di Russo ▴ 70
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Basic question about GENE 1.0 ST
biomaRt oneChannelGUI biomaRt oneChannelGUI
updated 13.0 years ago by ▴ 60 • written 13.0 years ago by ▴ 200
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conditions to apply BH correction
oneChannelGUI oneChannelGUI
updated 13.6 years ago by ▴ 70 • written 13.6 years ago by ▴ 10
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1.1k
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Problem with oneChannelGUI
oneChannelGUI oneChannelGUI
updated 13.7 years ago by ▴ 200 • written 13.7 years ago by ▴ 500
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1.2k
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Problem with oneChannelGUI
oneChannelGUI oneChannelGUI
updated 13.7 years ago by 25k • written 13.7 years ago by ▴ 200
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2
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1.2k
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Problems running oneChannelGUI
probe oneChannelGUI probe oneChannelGUI
updated 14.1 years ago by ▴ 910 • written 14.1 years ago by ▴ 200
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2.1k
views
oneChannelGUI
Rgraphviz affylmGUI oneChannelGUI Rgraphviz affylmGUI oneChannelGUI
updated 14.1 years ago by ▴ 500 • written 14.1 years ago by ▴ 200
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annotations of Human Gene 1.0 ST microarray and oneChannelGUI
Microarray Normalization probe oneChannelGUI Microarray Normalization probe oneChannelGUI
14.3 years ago rcaloger ▴ 500
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1.4k
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annotations of Human Gene 1.0 ST microarray and oneChannelGUI
Microarray Normalization GO probe oneChannelGUI Microarray Normalization GO probe
14.3 years ago ifig319@ifi.csic.es ▴ 10
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Different result from gcrma function by using command line gcrma, affylmGUI and oneChannelGUI.
gcrma affylmGUI oneChannelGUI gcrma affylmGUI oneChannelGUI
14.4 years ago Lin Ying ▴ 10
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1.9k
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oneChannelGUI and Affymetrix 1.0 ST arrays
GO probe oneChannelGUI GO probe oneChannelGUI
updated 14.5 years ago by ▴ 500 • written 14.5 years ago by ▴ 280
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Difficulty installing oneChannelGUI in Vista
Cancer affylmGUI oneChannelGUI Cancer affylmGUI oneChannelGUI
updated 14.6 years ago by 67k • written 14.6 years ago by ★ 2.0k
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Exon array annotation with limma?
Annotation oneChannelGUI Annotation oneChannelGUI
15.0 years ago Michael Imbeault ▴ 220
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Exon array annotation with limma?
Normalization limma biomaRt oneChannelGUI Normalization limma biomaRt oneChannelGUI
updated 15.0 years ago by ▴ 500 • written 15.0 years ago by ▴ 220
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different normalized results using oneChannelGUI, and oligo packages
Normalization limma oligo oneChannelGUI Normalization limma oligo oneChannelGUI
updated 15.1 years ago by ★ 4.3k • written 15.1 years ago by ▴ 500
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1.5k
views
different normalized results using oneChannelGUI and oligo packages
GO limma oligo oneChannelGUI GO limma oligo oneChannelGUI
updated 15.1 years ago by ★ 4.3k • written 15.1 years ago by ▴ 840
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1.1k
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export contrast results in OneChannelGUI
limma oneChannelGUI limma oneChannelGUI
updated 15.1 years ago by ▴ 500 • written 15.1 years ago by ▴ 840
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Analysing Human Gene ST 1.0 Arrays with oligo and, oneChannelGUI yield different number of probesets
Preprocessing oneChannelGUI Preprocessing oneChannelGUI
15.2 years ago rcaloger ▴ 500
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5
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2.3k
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Analysing Human Gene ST 1.0 Arrays with oligo and oneChannelGUI yield different number of probesets
Preprocessing cdf oligo oneChannelGUI Preprocessing cdf oligo oneChannelGUI
updated 15.2 years ago by ★ 4.3k • written 15.2 years ago by ▴ 840
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Question about inspecting splices indexes
Organism probe oneChannelGUI Organism probe oneChannelGUI
15.5 years ago raffaele calogero ▴ 500
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1.2k
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Question about inspecting splices indexes (oneChannelGUI)
oneChannelGUI oneChannelGUI
15.5 years ago Guido Leoni ▴ 20
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onechannelGUI error
probe oneChannelGUI probe oneChannelGUI
15.6 years ago rcaloger ▴ 500
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943
views
onechannelGUI error,
probe oneChannelGUI probe oneChannelGUI
15.6 years ago PJARES@clinic.ub.es ▴ 30
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1.9k
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BioStrings questions
probe oneChannelGUI probe oneChannelGUI
16.2 years ago rcaloger ▴ 500
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1.3k
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Problem with oneChannelGUI
GUI Biobase affy affyio oneChannelGUI preprocessCore GUI Biobase affy affyio
16.5 years ago Luc Vallieres ▴ 20
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1.3k
views
oneChannelGUI and hugene10stv1cdf
oneChannelGUI oneChannelGUI
updated 16.5 years ago by ▴ 500 • written 16.5 years ago by ▴ 280
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3
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1.2k
views
oneChannelGUI problem
graph oneChannelGUI graph oneChannelGUI
updated 16.9 years ago by ▴ 500 • written 16.9 years ago by ▴ 320
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803
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Errors in importing cel files into oneChannelGUI
probe oneChannelGUI probe oneChannelGUI
17.2 years ago Ester Feldmesser ▴ 60
34 results • Page 1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
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Scholar to James W. MacDonald 67k
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