Showing : oligoclasses • reset
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Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 4.1 years ago by • 0
2
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8
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1.6k
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pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses oligo pdInfoBuilder
3.7 years ago efoss ▴ 10
2
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6
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4.3k
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Can't install package oligoClasses
R oligoClasses ff
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by ▴ 20
2
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2
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2.4k
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IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges oligoclasses BiocGenerics
6.8 years ago GENOMIC_region • 0
0
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7
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2.1k
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oligo and GenericPDInfo
affy oligoclasses oligo package pdinfobuilder annotationdbi
updated 7.7 years ago by 68k • written 7.7 years ago by ▴ 510
2
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1
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1.5k
views
Output of ArrayExpress() function
oligo oligoclasses arrayexpress
updated 8.2 years ago by 68k • written 8.2 years ago by • 0
2
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4
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1.6k
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getProbeInfo and exprs return matrices and data.frames of different dimensions
oligo oligoclasses affy
updated 8.4 years ago by 68k • written 8.4 years ago by • 0
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2
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2.7k
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Cannot install Oligo package
oligo oligoclasses
8.7 years ago Anna Dvorkin ▴ 40
0
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2
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2.1k
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pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews Annotation Organism biocViews oligo oligoClasses BiocViews BiocViews Annotation
updated 9.9 years ago by ▴ 20 • written 11.2 years ago by ▴ 40
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Error using oligo package with Affymetrix Arabidopsis Gene ST1.0 array data: paCalls() returns error 'vector would be too long'
oligo oligoClasses oligo oligoClasses
11.3 years ago Peter Crisp ▴ 10
0
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1
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1.7k
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limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 11.3 years ago by 68k • written 11.3 years ago by ★ 13k
0
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8
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2.5k
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vsn preprocess with oligo package
vsn oligo oligoClasses vsn oligo oligoClasses
updated 12.2 years ago by 68k • written 12.2 years ago by ▴ 110
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4
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3.0k
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Problems with 'affxparser' package
oligoClasses oligoClasses
12.2 years ago Valor Becerra, Luis Miguel ▴ 30
3
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4
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2.0k
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cause 'memory not mapped' when use oligo
oligo oligoClasses oligo oligoClasses
updated 12.5 years ago by ▴ 50 • written 12.5 years ago by ★ 1.3k
0
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4
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3.3k
views
Error : package slot missing from signature for generic
Biobase lumi oligoClasses Biobase lumi oligoClasses
12.7 years ago Mark Cowley ▴ 910
0
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2
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1.6k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation oligo pdInfoBuilder oligoClasses Annotation oligo pdInfoBuilder oligoClasses
updated 13.1 years ago by ★ 4.3k • written 13.1 years ago by ▴ 630
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0
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Question about using oligo and SNPchip for copy number analysis
SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo
15.9 years ago Min-Han Tan ▴ 40
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1
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1.1k
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Bioconductor Digest, Vol 68, Issue 7
oligo pdInfoBuilder oligoClasses oligo pdInfoBuilder oligoClasses
written 16.5 years ago by ▴ 70
18 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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