Showing : oligoclasses • reset
0
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3
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2.1k
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Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 4.0 years ago by • 0
2
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8
replies
1.6k
views
pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses oligo pdInfoBuilder
3.7 years ago • updated 3.6 years ago efoss ▴ 10
2
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6
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4.3k
views
Can't install package oligoClasses
R oligoClasses ff
updated 4.5 years ago by ★ 4.0k • written 4.5 years ago by ▴ 20
2
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2
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2.3k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges oligoclasses BiocGenerics
6.7 years ago GENOMIC_region • 0
0
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7
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2.1k
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oligo and GenericPDInfo
affy oligoclasses oligo package pdinfobuilder annotationdbi
updated 7.6 years ago by 68k • written 7.6 years ago by ▴ 510
2
votes
1
reply
1.4k
views
Output of ArrayExpress() function
oligo oligoclasses arrayexpress
updated 8.1 years ago by 68k • written 8.1 years ago by • 0
2
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4
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1.6k
views
getProbeInfo and exprs return matrices and data.frames of different dimensions
oligo oligoclasses affy
updated 8.4 years ago by 68k • written 8.4 years ago by • 0
0
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2
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2.7k
views
Cannot install Oligo package
oligo oligoclasses
8.6 years ago Anna Dvorkin ▴ 40
0
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2
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2.1k
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pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews Annotation Organism biocViews oligo oligoClasses BiocViews BiocViews Annotation
updated 9.8 years ago by ▴ 20 • written 11.1 years ago by ▴ 40
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0
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1.7k
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Error using oligo package with Affymetrix Arabidopsis Gene ST1.0 array data: paCalls() returns error 'vector would be too long'
oligo oligoClasses oligo oligoClasses
11.2 years ago Peter Crisp ▴ 10
0
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1
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1.7k
views
limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 11.2 years ago by 68k • written 11.2 years ago by ★ 13k
0
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8
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2.4k
views
vsn preprocess with oligo package
vsn oligo oligoClasses vsn oligo oligoClasses
updated 12.1 years ago by 68k • written 12.1 years ago by ▴ 110
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4
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3.0k
views
Problems with 'affxparser' package
oligoClasses oligoClasses
12.2 years ago Valor Becerra, Luis Miguel ▴ 30
3
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4
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2.0k
views
cause 'memory not mapped' when use oligo
oligo oligoClasses oligo oligoClasses
updated 12.4 years ago by ▴ 50 • written 12.4 years ago by ★ 1.3k
0
votes
4
replies
3.3k
views
Error : package slot missing from signature for generic
Biobase lumi oligoClasses Biobase lumi oligoClasses
12.6 years ago Mark Cowley ▴ 910
0
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2
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1.6k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation oligo pdInfoBuilder oligoClasses Annotation oligo pdInfoBuilder oligoClasses
updated 13.0 years ago by ★ 4.3k • written 13.0 years ago by ▴ 630
0
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0
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1.5k
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Question about using oligo and SNPchip for copy number analysis
SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo
15.8 years ago Min-Han Tan ▴ 40
0
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1
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1.1k
views
Bioconductor Digest, Vol 68, Issue 7
oligo pdInfoBuilder oligoClasses oligo pdInfoBuilder oligoClasses
written 16.4 years ago by ▴ 70
18 results • Page 1 of 1
Recent ...
Replies
Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840
Dear Gordon, thank you for returning back ! Actually the output is not "NPX"-as indeed it most frequent output for a lot of pannels-but as …
Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Votes
Comment: Use of limma R package with targeted proteomics for DE analysis
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
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