Showing : oligoclasses • reset
0
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3
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2.1k
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Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 3.9 years ago by • 0
2
votes
8
replies
1.5k
views
pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses oligo pdInfoBuilder
3.6 years ago • updated 3.5 years ago efoss ▴ 10
2
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6
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4.2k
views
Can't install package oligoClasses
R oligoClasses ff
updated 4.4 years ago by ★ 4.0k • written 4.4 years ago by ▴ 20
2
votes
2
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2.3k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges oligoclasses BiocGenerics
6.6 years ago GENOMIC_region • 0
0
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7
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2.1k
views
oligo and GenericPDInfo
affy oligoclasses oligo package pdinfobuilder annotationdbi
updated 7.5 years ago by 67k • written 7.5 years ago by ▴ 510
2
votes
1
reply
1.4k
views
Output of ArrayExpress() function
oligo oligoclasses arrayexpress
updated 8.0 years ago by 67k • written 8.0 years ago by • 0
2
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4
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1.6k
views
getProbeInfo and exprs return matrices and data.frames of different dimensions
oligo oligoclasses affy
updated 8.3 years ago by 67k • written 8.3 years ago by • 0
0
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2
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2.7k
views
Cannot install Oligo package
oligo oligoclasses
8.5 years ago Anna Dvorkin ▴ 40
0
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2
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2.0k
views
pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews Annotation Organism biocViews oligo oligoClasses BiocViews BiocViews Annotation
updated 9.7 years ago by ▴ 20 • written 11.0 years ago by ▴ 40
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0
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1.6k
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Error using oligo package with Affymetrix Arabidopsis Gene ST1.0 array data: paCalls() returns error 'vector would be too long'
oligo oligoClasses oligo oligoClasses
11.1 years ago Peter Crisp ▴ 10
0
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1
reply
1.7k
views
limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 11.1 years ago by 67k • written 11.1 years ago by ★ 13k
0
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8
replies
2.4k
views
vsn preprocess with oligo package
vsn oligo oligoClasses vsn oligo oligoClasses
updated 12.1 years ago by 67k • written 12.1 years ago by ▴ 110
0
votes
4
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3.0k
views
Problems with 'affxparser' package
oligoClasses oligoClasses
12.1 years ago Valor Becerra, Luis Miguel ▴ 30
3
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4
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1.9k
views
cause 'memory not mapped' when use oligo
oligo oligoClasses oligo oligoClasses
updated 12.4 years ago by ▴ 50 • written 12.4 years ago by ★ 1.3k
0
votes
4
replies
3.2k
views
Error : package slot missing from signature for generic
Biobase lumi oligoClasses Biobase lumi oligoClasses
12.5 years ago Mark Cowley ▴ 910
0
votes
2
replies
1.6k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation oligo pdInfoBuilder oligoClasses Annotation oligo pdInfoBuilder oligoClasses
updated 12.9 years ago by ★ 4.3k • written 12.9 years ago by ▴ 630
0
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0
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1.5k
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Question about using oligo and SNPchip for copy number analysis
SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo
15.7 years ago Min-Han Tan ▴ 40
0
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1
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1.1k
views
Bioconductor Digest, Vol 68, Issue 7
oligo pdInfoBuilder oligoClasses oligo pdInfoBuilder oligoClasses
written 16.3 years ago by ▴ 70
18 results • Page 1 of 1
Recent ...
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Comment: build samplesheet and plot profile by yf • 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build by James W. MacDonald 67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10
I see. Thank you ATpoint!
Votes
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Answer: Selection of correct coefficients or contrasts in DESeq2
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