Showing : oligoclasses • reset
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228
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Custom CDF creation for HTA 2.0 array using GTF annotation
oligo oligoClasses pdInfoBuilder affycoretools affyio
16 days ago • updated 15 days ago Seymoo • 0
0
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3
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2.2k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 4.2 years ago by • 0
2
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8
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1.6k
views
pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses oligo pdInfoBuilder
3.8 years ago • updated 3.7 years ago efoss ▴ 10
2
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6
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4.4k
views
Can't install package oligoClasses
R oligoClasses ff
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by ▴ 20
2
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2
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2.4k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges oligoclasses BiocGenerics
6.9 years ago GENOMIC_region • 0
0
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7
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2.2k
views
oligo and GenericPDInfo
affy oligoclasses oligo package pdinfobuilder annotationdbi
updated 7.8 years ago by 68k • written 7.8 years ago by ▴ 510
2
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1
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1.5k
views
Output of ArrayExpress() function
oligo oligoclasses arrayexpress
updated 8.2 years ago by 68k • written 8.2 years ago by • 0
2
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4
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1.7k
views
getProbeInfo and exprs return matrices and data.frames of different dimensions
oligo oligoclasses affy
updated 8.5 years ago by 68k • written 8.5 years ago by • 0
0
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2.8k
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Cannot install Oligo package
oligo oligoclasses
8.7 years ago Anna Dvorkin ▴ 40
0
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2
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2.1k
views
pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews Annotation Organism biocViews oligo oligoClasses BiocViews BiocViews Annotation
updated 10.0 years ago by ▴ 20 • written 11.3 years ago by ▴ 40
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0
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1.7k
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Error using oligo package with Affymetrix Arabidopsis Gene ST1.0 array data: paCalls() returns error 'vector would be too long'
oligo oligoClasses oligo oligoClasses
11.3 years ago Peter Crisp ▴ 10
0
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1
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1.7k
views
limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 11.3 years ago by 68k • written 11.3 years ago by ★ 13k
0
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8
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2.5k
views
vsn preprocess with oligo package
vsn oligo oligoClasses vsn oligo oligoClasses
updated 12.3 years ago by 68k • written 12.3 years ago by ▴ 110
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4
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3.0k
views
Problems with 'affxparser' package
oligoClasses oligoClasses
12.3 years ago Valor Becerra, Luis Miguel ▴ 30
3
votes
4
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2.0k
views
cause 'memory not mapped' when use oligo
oligo oligoClasses oligo oligoClasses
updated 12.6 years ago by ▴ 50 • written 12.6 years ago by ★ 1.3k
0
votes
4
replies
3.3k
views
Error : package slot missing from signature for generic
Biobase lumi oligoClasses Biobase lumi oligoClasses
12.7 years ago Mark Cowley ▴ 910
0
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2
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1.6k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation oligo pdInfoBuilder oligoClasses Annotation oligo pdInfoBuilder oligoClasses
updated 13.1 years ago by ★ 4.3k • written 13.1 years ago by ▴ 630
0
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0
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1.5k
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Question about using oligo and SNPchip for copy number analysis
SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo
16.0 years ago Min-Han Tan ▴ 40
0
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1
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1.1k
views
Bioconductor Digest, Vol 68, Issue 7
oligo pdInfoBuilder oligoClasses oligo pdInfoBuilder oligoClasses
written 16.6 years ago by ▴ 70
19 results • Page 1 of 1
Recent ...
Replies
Comment: DiffBind; Error: No sites have activity greater than filter value by etiennedanis • 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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