Showing : oligoClasses • reset
0
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1.9k
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Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 3.7 years ago by • 0
2
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8
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1.4k
views
pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses oligo pdInfoBuilder
3.4 years ago • updated 3.3 years ago efoss ▴ 10
2
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6
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4.1k
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Can't install package oligoClasses
R oligoClasses ff
updated 4.2 years ago by ★ 4.0k • written 4.2 years ago by ▴ 20
2
votes
2
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2.2k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges oligoclasses BiocGenerics
6.4 years ago GENOMIC_region • 0
0
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7
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2.0k
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oligo and GenericPDInfo
affy oligoclasses oligo package pdinfobuilder annotationdbi
updated 7.4 years ago by 67k • written 7.4 years ago by ▴ 510
2
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1
reply
1.4k
views
Output of ArrayExpress() function
oligo oligoclasses arrayexpress
updated 7.8 years ago by 67k • written 7.8 years ago by • 0
2
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4
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1.5k
views
getProbeInfo and exprs return matrices and data.frames of different dimensions
oligo oligoclasses affy
updated 8.1 years ago by 67k • written 8.1 years ago by • 0
0
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2
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2.6k
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Cannot install Oligo package
oligo oligoclasses
8.3 years ago Anna Dvorkin ▴ 40
0
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2
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2.0k
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pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews Annotation Organism biocViews oligo oligoClasses BiocViews BiocViews Annotation
updated 9.5 years ago by ▴ 20 • written 10.8 years ago by ▴ 40
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1.6k
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Error using oligo package with Affymetrix Arabidopsis Gene ST1.0 array data: paCalls() returns error 'vector would be too long'
oligo oligoClasses oligo oligoClasses
10.9 years ago Peter Crisp ▴ 10
0
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1
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1.6k
views
limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 10.9 years ago by 67k • written 10.9 years ago by ★ 13k
0
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8
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2.3k
views
vsn preprocess with oligo package
vsn oligo oligoClasses vsn oligo oligoClasses
updated 11.9 years ago by 67k • written 11.9 years ago by ▴ 110
0
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4
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2.9k
views
Problems with 'affxparser' package
oligoClasses oligoClasses
11.9 years ago Valor Becerra, Luis Miguel ▴ 30
3
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4
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1.9k
views
cause 'memory not mapped' when use oligo
oligo oligoClasses oligo oligoClasses
updated 12.2 years ago by ▴ 50 • written 12.2 years ago by ★ 1.3k
0
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4
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3.2k
views
Error : package slot missing from signature for generic
Biobase lumi oligoClasses Biobase lumi oligoClasses
12.3 years ago Mark Cowley ▴ 910
0
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2
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1.5k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation oligo pdInfoBuilder oligoClasses Annotation oligo pdInfoBuilder oligoClasses
updated 12.7 years ago by ★ 4.3k • written 12.7 years ago by ▴ 630
0
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0
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1.4k
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Question about using oligo and SNPchip for copy number analysis
SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo
15.5 years ago Min-Han Tan ▴ 40
0
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1
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1.0k
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Bioconductor Digest, Vol 68, Issue 7
oligo pdInfoBuilder oligoClasses oligo pdInfoBuilder oligoClasses
written 16.1 years ago by ▴ 70
18 results • Page 1 of 1
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Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?
Votes
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
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