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noiseq
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Inquiring about Comparative Analysis without Replicates in NOIseq R Package
NOISeq
withoutreplicate
Noiseq
updated 19 months ago by
ATpoint
★ 4.7k • written 19 months ago by
Rutuja
• 0
1
vote
1
reply
1.0k
views
NOIseq Probability column
RNAseq
RNASeqData
NOISeq
2.8 years ago
Pratibha
▴ 10
0
votes
2
replies
1.1k
views
Differential expression on RNAseq without replicates
DESeq2
NOISeq
edgeR
updated 4.2 years ago by
ATpoint
★ 4.7k • written 4.2 years ago by
Themis
• 0
3
votes
6
replies
2.3k
views
deseq2 + filtering low counts with noiseq function
deseq2
noiseq
lowcounts
rnaseq
updated 3.2 years ago by
Michael Love
43k • written 4.5 years ago by
andreia
▴ 10
0
votes
1
reply
1.0k
views
How to arrange multiple plots into one page in NOISeq?
noiseq
RNA-seq
quality control
updated 10 months ago by
baptiste.bidon
• 0 • written 5.6 years ago by
Arindam
▴ 80
0
votes
0
replies
851
views
NOISeq 'readData' not writing correctly
software error
NOISeq
5.7 years ago
jledmondson
• 0
0
votes
1
reply
1.1k
views
Is possible to use NOISeq with counts from RSubread?
noiseq
rsubread
tophat
bowtie
bowtie2
5.8 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
1.2k
views
Noiseqbio function (NOISEQ package)
noiseq
logfoldchange
6.9 years ago
Aurora
▴ 20
0
votes
0
replies
1.2k
views
NOISeq: Need help with my data frame
R
noiseq
data.frame
7.1 years ago
aokoro
• 0
0
votes
0
replies
1.9k
views
Problem with heatmap by ComplexHeatmap
complexheatmap
Rstudio
NOISeq
7.5 years ago
Luiz
• 0
0
votes
3
replies
1.7k
views
Is the CPM filtering method from NOISeq unsupervised?
rnaseq
de analysis
gene filtering
noiseq
updated 7.6 years ago by
James W. MacDonald
68k • written 7.6 years ago by
Mau
▴ 50
0
votes
5
replies
4.4k
views
GC content and length bias correction with DESeq2 using cqn normalization factor matrix
deseq2
cqn
noiseq
updated 7.9 years ago by
Michael Love
43k • written 7.9 years ago by
glmazzo
▴ 10
0
votes
0
replies
1.4k
views
NOISeq error message while using ARSyNseq batch correction function
noiseq
batch effect
ARSyNseq
9.4 years ago
lina.faller
▴ 10
0
votes
0
replies
1.2k
views
Question: type of NOISeq package input file
RNASeq
NOISeq
RNASeq
NOISeq
12.0 years ago
Guest User
★ 13k
0
votes
2
replies
3.0k
views
NOISeq initialization problem
NOISeq
NOISeq
updated 12.4 years ago by
Dan Tenenbaum
★ 8.2k • written 12.4 years ago by
Guest User
★ 13k
0
votes
4
replies
2.3k
views
NOISeq installation error
NOISeq
NOISeq
updated 12.4 years ago by
Sean Davis
21k • written 12.4 years ago by
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
1.3k
views
NOISeq-real input parameters
NOISeq
NOISeq
13.0 years ago
Guest User
★ 13k
17 results • Page
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Recent ...
Replies
Comment: Conumee with EPICv2 Segment function
by
zpingfeng
• 0
I have the same issue too for the analysis lack of sample replicates. It was fine for the samples with replicates
Comment: Complex contrasts for between and within subject comparisons
by
wuwenhui2
• 0
@gordonsmyth Dear Dr. Smyth, in this design, I am interested to extract genes that have different expression profile at any of the time poi…
Comment: edgeR design between and within subjects
by
wuwenhui2
• 0
@luna Hi Aaron, Your explanation is very helpful. If having three time points instead of three cell types measured for each patient, usin…
Comment: Issue when attempting to use output from DECIPHER IDtaxa (pr2 V5) with dada2/phy
by
Daniel
• 0
Two things: - PR2 version 5.0 and above have 9 levels and not 8 (up to version 4.14). So the code should be: > ranks.pr2 <- c("domain",…
Comment: Removing UTR from GTF for gene quantification
by
Michael Love
43k
Yes, we need to discourage tagging software packages arbitrarily on Bioconductor support site. This sends emails to the package maintainers…
Votes
Comment: Identifying potentially associated gene set to drug response using GSVA
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
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68k
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