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noiseq
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Inquiring about Comparative Analysis without Replicates in NOIseq R Package
NOISeq
withoutreplicate
Noiseq
updated 18 months ago by
ATpoint
★ 4.6k • written 18 months ago by
Rutuja
• 0
1
vote
1
reply
977
views
NOIseq Probability column
RNAseq
RNASeqData
NOISeq
2.7 years ago • updated 2.6 years ago
Pratibha
▴ 10
0
votes
2
replies
1.1k
views
Differential expression on RNAseq without replicates
DESeq2
NOISeq
edgeR
updated 4.1 years ago by
ATpoint
★ 4.6k • written 4.1 years ago by
Themis
• 0
3
votes
6
replies
2.1k
views
deseq2 + filtering low counts with noiseq function
deseq2
noiseq
lowcounts
rnaseq
updated 3.1 years ago by
Michael Love
43k • written 4.4 years ago by
andreia
▴ 10
0
votes
1
reply
974
views
How to arrange multiple plots into one page in NOISeq?
noiseq
RNA-seq
quality control
updated 8 months ago by
baptiste.bidon
• 0 • written 5.5 years ago by
Arindam
▴ 80
0
votes
0
replies
828
views
NOISeq 'readData' not writing correctly
software error
NOISeq
5.6 years ago
jledmondson
• 0
0
votes
1
reply
1.1k
views
Is possible to use NOISeq with counts from RSubread?
noiseq
rsubread
tophat
bowtie
bowtie2
5.7 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
1.2k
views
Noiseqbio function (NOISEQ package)
noiseq
logfoldchange
6.8 years ago
Aurora
▴ 20
0
votes
0
replies
1.2k
views
NOISeq: Need help with my data frame
R
noiseq
data.frame
7.0 years ago
aokoro
• 0
0
votes
0
replies
1.8k
views
Problem with heatmap by ComplexHeatmap
complexheatmap
Rstudio
NOISeq
7.4 years ago
Luiz
• 0
0
votes
3
replies
1.7k
views
Is the CPM filtering method from NOISeq unsupervised?
rnaseq
de analysis
gene filtering
noiseq
updated 7.5 years ago by
James W. MacDonald
68k • written 7.5 years ago by
Mau
▴ 50
0
votes
5
replies
4.3k
views
GC content and length bias correction with DESeq2 using cqn normalization factor matrix
deseq2
cqn
noiseq
updated 7.8 years ago by
Michael Love
43k • written 7.8 years ago by
glmazzo
▴ 10
0
votes
0
replies
1.4k
views
NOISeq error message while using ARSyNseq batch correction function
noiseq
batch effect
ARSyNseq
9.3 years ago
lina.faller
▴ 10
0
votes
0
replies
1.2k
views
Question: type of NOISeq package input file
RNASeq
NOISeq
RNASeq
NOISeq
11.9 years ago
Guest User
★ 13k
0
votes
2
replies
3.0k
views
NOISeq initialization problem
NOISeq
NOISeq
updated 12.3 years ago by
Dan Tenenbaum
★ 8.2k • written 12.3 years ago by
Guest User
★ 13k
0
votes
4
replies
2.3k
views
NOISeq installation error
NOISeq
NOISeq
updated 12.3 years ago by
Sean Davis
21k • written 12.3 years ago by
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
1.3k
views
NOISeq-real input parameters
NOISeq
NOISeq
12.9 years ago
Guest User
★ 13k
17 results • Page
1 of 1
Recent ...
Replies
Answer: DESeq2 adujsted p-value cutoff seemingly not working
by
James W. MacDonald
68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
by
SofieK
• 0
Thank you, I will try this and see.
Comment: DiffBind - question on the use of filtered or unfiltered input data
by
deltaexploitss
• 0
Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…
Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status
by
Renuka
• 0
how you did it pls explain
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
by
James W. MacDonald
68k
If I understand correctly, you want to assess differential transcript abundances. If so, there are a couple of ways you can do that. One wa…
Votes
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
Comment: Unused arguments error without used arguments in GSVA?
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James W. MacDonald
68k
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Sara
▴ 20
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Michael Love
43k
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Malcolm Cook
★ 1.6k
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shepherl
4.1k
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