Bioconductor Ncbi

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825

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Rstudio cDNA ensembldb NCBI

15 months ago • updated 14 months ago R_Page • 0

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2.2k

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RStudio convert ensembldb NCBI

updated 4 months ago by MauriAndres • 0 • written 15 months ago by j_denton • 0

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846

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getGFF NCBI biomartr biomaRt

3.5 years ago Matan G. ▴ 60

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1.3k

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MakeOrgPackageFromNCBI NCBI SQL AnnotationForge

updated 4.8 years ago by James W. MacDonald 68k • written 4.8 years ago by chefer • 0

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1.7k

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ontology edger limma ncbi organism package

updated 4.9 years ago by Gordon Smyth 52k • written 4.9 years ago by babak.loghmani ▴ 20

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2.6k

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rsubread ncbi GRCh38 hg38

updated 8.3 years ago by Wei Shi ★ 3.6k • written 8.3 years ago by jan.soderman • 0

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1.6k

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ncbi sra search

9.1 years ago massacomgrao • 0

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4.1k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 9.1 years ago by Hervé Pagès 16k • written 9.1 years ago by gokcen.eraslan ▴ 10

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3.7k

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microarray normalization ncbi

updated 9.8 years ago by James W. MacDonald 68k • written 9.8 years ago by pankajnarula84 ▴ 20

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1.4k

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annotate ncbi url

10.2 years ago reuma • 0

10 results • Page 1 of 1

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Answer: Plot title for PCA in DESeq2 by ATpoint ★ 4.7k

The function uses ggplot2, so you need `+ ggtitle('title')`. Please take a ggplot2 tutorial for details.

Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

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Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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