Bioconductor Ncbi

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868

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Rstudio cDNA ensembldb NCBI

16 months ago R_Page • 0

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2.5k

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RStudio convert ensembldb NCBI

updated 6 months ago by MauriAndres • 0 • written 17 months ago by j_denton • 0

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858

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getGFF NCBI biomartr biomaRt

3.6 years ago Matan G. ▴ 60

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1.3k

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MakeOrgPackageFromNCBI NCBI SQL AnnotationForge

updated 4.9 years ago by James W. MacDonald 68k • written 4.9 years ago by chefer • 0

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1.8k

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ontology edger limma ncbi organism package

updated 5.0 years ago by Gordon Smyth 52k • written 5.1 years ago by babak.loghmani ▴ 20

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2.6k

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rsubread ncbi GRCh38 hg38

updated 8.4 years ago by Wei Shi ★ 3.6k • written 8.4 years ago by jan.soderman • 0

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1.7k

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ncbi sra search

9.2 years ago massacomgrao • 0

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4.2k

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 9.2 years ago by Hervé Pagès 16k • written 9.2 years ago by gokcen.eraslan ▴ 10

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3.8k

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microarray normalization ncbi

updated 9.9 years ago by James W. MacDonald 68k • written 9.9 years ago by pankajnarula84 ▴ 20

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1.5k

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annotate ncbi url

10.3 years ago reuma • 0

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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