Showing : ncbi • reset
2
votes
3
replies
793
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio cDNA ensembldb NCBI
13 months ago R_Page • 0
4
votes
6
replies
2.0k
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
updated 3 months ago by • 0 • written 14 months ago by • 0
0
votes
0
replies
820
views
getGFFSet function CRASHES R session
getGFF NCBI biomartr biomaRt
3.4 years ago Matan G. ▴ 60
2
votes
4
replies
1.2k
views
MakeOrgPackageFromNCBI SQL error
MakeOrgPackageFromNCBI NCBI SQL AnnotationForge
updated 4.7 years ago by 67k • written 4.7 years ago by • 0
1
vote
5
replies
1.7k
views
Gene Ontology analysis
ontology edger limma ncbi organism package
updated 4.9 years ago by 52k • written 4.9 years ago by ▴ 20
0
votes
4
replies
2.5k
views
Rsubread function buildindex cannot handle the GRCh38.p7 reference from NCBI
rsubread ncbi GRCh38 hg38
updated 8.2 years ago by ★ 3.6k • written 8.2 years ago by • 0
0
votes
0
replies
1.6k
views
Search SRA based on BioSample Attributes
ncbi sra search
9.0 years ago massacomgrao • 0
8
votes
7
replies
4.0k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb
updated 9.0 years ago by 16k • written 9.0 years ago by ▴ 10
2
votes
2
replies
3.6k
views
How to Normalize the Microarray Data Obtained from ncbi?
microarray normalization ncbi
updated 9.7 years ago by 67k • written 9.7 years ago by ▴ 20
0
votes
1
reply
1.4k
views
.getNcbiURL returns old NCBI url ?
annotate ncbi url
10.1 years ago reuma • 0
10 results • Page 1 of 1
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Replies
Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0
Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this
Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0
Michael, Thank you very much!
Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k
Yes, with the knowledge that, it is expected to be underpowered.
Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0
Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?
Answer: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k
The short answer is yes, you can use even a single sample to estimate the batch effect (and therefore control for it in otherwise confounde…
Votes
Answer: SingleCellExperiment convenience function for metadata+expression?
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Answer: EdgeR Biological CVs
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
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