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nanostringdiff
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0
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1.5k
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fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff
clusterProfiler
fgsea
19 months ago
pg45863
▴ 10
0
votes
2
replies
1.3k
views
Nanostring data differential expression analysis: limma or DESeq2?
DESeq2
NanoStringDiff
limma
19 months ago
pg45863
▴ 10
0
votes
1
reply
857
views
Micro Array GEO data analysis
GEOquery
MicroarrayData
Normalization
Microarray
NanoStringDiff
updated 23 months ago by
James W. MacDonald
67k • written 23 months ago by
Aleksandra
• 0
0
votes
2
replies
683
views
NanoStringDiff contrast vectors
NanoStringDiff
updated 2.0 years ago by
James W. MacDonald
67k • written 2.0 years ago by
Paraskevi
• 0
0
votes
0
replies
728
views
NanoStringDiff
DifferentialExpression
NanoStringDiff
3.1 years ago
sanrie10
• 0
5
votes
7
replies
1.9k
views
Nanostringdiff - defining contrast values for blocking variables in glm
limma
edgeR
DESeq2
NanoStringDiff
updated 3.3 years ago by
James W. MacDonald
67k • written 3.3 years ago by
reberya
• 0
3
votes
2
replies
1.2k
views
R NanoStringDiff: DE analysis, from 2 group comparison method how "logFC" generated?
Nan
NanoStringDiff
3.5 years ago
choijamts
• 0
3
votes
6
replies
2.2k
views
Why NanoStringDiff package so slow?
NanoStringDiff
NanoString
nCounter
DE analysis
updated 14 months ago by
georgersmith
• 0 • written 5.4 years ago by
lim6432
▴ 50
0
votes
0
replies
823
views
NanoStringDiff - housekeeping genes variation
NanoStringDiff
3.8 years ago
YM
• 0
1
vote
1
reply
1.1k
views
NanoStringDiff Not Recognized as Numeric
Bioconductor
Transcriptomics
NanoStringDiff
updated 4.2 years ago by
Laurent Gatto
1.6k • written 4.2 years ago by
Pedro
▴ 10
1
vote
7
replies
1.3k
views
NanoStringDiff glm.LRT not finishing after 20 hours
NanoStringDiff
5.0 years ago
stephen.pollo
• 0
0
votes
2
replies
1.1k
views
NanoStringDiff correction for variation between patient
NanoStringDiff
GLM
Gene expression
updated 5.4 years ago by
James W. MacDonald
67k • written 5.4 years ago by
Guillaume Robert
• 0
3
votes
3
replies
1.7k
views
NanoStringDiff counts not numeric
NanoStringDiff
updated 11 months ago by
pjanas
• 0 • written 5.6 years ago by
noelleenright
▴ 10
1
vote
6
replies
2.3k
views
How to access normalized data in the NanoStringDiff package?
nanostringdiff
nanostring
NanoStringDiff
updated 6.6 years ago by
James W. MacDonald
67k • written 6.6 years ago by
casey.rimland
▴ 170
0
votes
0
replies
1.5k
views
design matrix and contrast for paired experiment using NanoStringDiff for nCounter data
nanostring
NanoStringDiff
design and contrast matrix
differential gene expression
ncounter
7.5 years ago
c.kohler
• 0
15 results • Page
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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character
by
ATpoint
★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format
by
ControlF5
• 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open!
by
Alan Downey
• 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix
by
O'Brien
• 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts
by
O'Brien
• 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
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A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
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A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
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