Bioconductor Nanostring

Showing : nanostring • reset

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1.2k

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GSVA Normalization BatchEffect GSVAdata NanoString

2.3 years ago Zhijie • 0

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2.9k

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ExpressionSet Assay NanoString Error Data

updated 2.7 years ago by James W. MacDonald 68k • written 2.7 years ago by junli1988 • 0

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2.2k

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NanoNormIter DifferentialExpression Housekeeping DESeq2 NanoString

updated 3.2 years ago by Michael Love 43k • written 3.2 years ago by argonvibio • 0

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2.3k

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plotRLE Nanostring RUVSeq DESEQ2

updated 8 months ago by BioinfGuru ▴ 70 • written 3.8 years ago by xiaofeiwang18266 ▴ 60

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2.4k

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NanoStringDiff NanoString nCounter DE analysis

updated 17 months ago by georgersmith • 0 • written 5.7 years ago by lim6432 ▴ 50

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2.1k

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RUV Nanostring RUV-III

updated 5.0 years ago by hermidalc ▴ 20 • written 5.7 years ago by raf4 ▴ 30

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2.0k

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deseq2 nanostring

5.3 years ago acs1990 ▴ 10

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limma nanostring contrasts

updated 5.5 years ago by Gordon Smyth 52k • written 5.5 years ago by uridavid.akavia • 0

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NanoString Differential Expressed Genes Analysis DESeq2

updated 3.3 years ago by Clara ▴ 10 • written 5.7 years ago by lim6432 ▴ 50

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1.8k

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GSVA Nanostring

6.7 years ago • updated 6.0 years ago SB • 0

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1.6k

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differential gene expression nanostring confounding factors

updated 6.3 years ago by James W. MacDonald 68k • written 6.3 years ago by Guillaume Robert • 0

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2.5k

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nanostringdiff nanostring NanoStringDiff

updated 6.8 years ago by James W. MacDonald 68k • written 6.8 years ago by casey.rimland ▴ 170

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6.7k

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deseq2 nanostring

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by casey.rimland ▴ 170

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1.3k

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deseq2 confounders nanostring rnaseq differential gene expression

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by kim.malek88 • 0

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nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

7.7 years ago c.kohler • 0

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deseq2 variancestabilizingtransformation nanostring

updated 8.0 years ago by Michael Love 43k • written 8.0 years ago by johnmcma ▴ 10

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2.2k

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nanostring normalization

9.5 years ago alakatos ▴ 130

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13k

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nanostring limma

updated 9.9 years ago by ker61 ▴ 20 • written 10.0 years ago by mali salmon ▴ 370

18 results • Page 1 of 1

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Comment: Differential expression analysis using two TCGA datasets by ATpoint ★ 4.8k

If these are two different batches then they're fully confounded making it statistically invalid. Biologically, I find it at least question…

Comment: PhD scholar by ATpoint ★ 4.8k

Hi, please consider asking this at biostars.org as here we're mainly answering precise technical questions towards the packages. You are se…

Answer: how to use `arrayWeightsQuick()`? by Gordon Smyth 52k

Yes, that is the correct way to use `arrayWeightsQuick`. Thanks for pointing out that there is still a reference to `arrayWeightsSimple` i…

Answer: fast apply on RleList by story.benjamin ▴ 20

solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…

Comment: fast apply on RleList by story.benjamin ▴ 20

Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…

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Having Trouble Using CNE12() and CNE21() in CNEr

Answer: Having Trouble Using CNE12() and CNE21() in CNEr

annotation EpicV2

Answer: fast apply on RleList

Answer: BiocParallel_1.40.1.tar.gz not available

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Popular Question to Ariel Chernomoretz ▴ 170