Bioconductor Msaprettyprint()

Showing : msaprettyprint() • reset

votes

replies

4.3k

views

msa msaprettyprint()

updated 6.8 years ago by UBod ▴ 300 • written 6.8 years ago by cav3gh • 0

votes

1.7k

views

msaprettyprint() latex pdf msa

updated 7.1 years ago by UBod ▴ 300 • written 7.1 years ago by Cecil • 0

votes

replies

6.6k

views

msaprettyprint() msa multiplealignment export

updated 7.1 years ago by UBod ▴ 300 • written 7.1 years ago by Assa Yeroslaviz ★ 1.5k

votes

replies

12k

views

msa msaprettyprint() fasta

updated 7.8 years ago by tongtong.wang1210 • 0 • written 8.1 years ago by Olorin ▴ 50

vote

replies

1.6k

views

msa msaprettyprint() multiple sequence alignment

8.0 years ago map2085 ▴ 40

vote

5.3k

views

msa latex msaPrettyPrint()

8.1 years ago Olorin ▴ 50

6 results • Page 1 of 1

Recent ...

Replies

Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

Awards • All