Showing : mroast • reset
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Interpretation of mroast p-value results for gene set testing of specific molecular signatures using microarray data
mroast camera gene set testing
4.1 years ago svlachavas ▴ 830
4
votes
4
replies
1.6k
views
Interpreting mroast results
mroast limma roast
6.0 years ago SB • 0
1
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2
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1.5k
views
Explanation of mroast results for specific biological processes and error with barcodeplot function with a microarray dataset
limma mroast agilent microarrays GO.BP barcodeplot
updated 6.1 years ago by 51k • written 6.1 years ago by ▴ 830
2
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3
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1.6k
views
Perform limma based gene-set testing for a two-group comparison in a microarray dataset regarding specific biological processes
limma agilent microarrays mroast fry gene tests gene set testing
updated 6.1 years ago by 51k • written 6.1 years ago by ▴ 830
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2
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1.1k
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mroast/fry with gene weights for most or all genes
limma mroast fry
updated 6.2 years ago by 51k • written 6.2 years ago by ▴ 180
3
votes
3
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1.1k
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Conditions for using Fry
limma mroast fry
updated 6.3 years ago by 51k • written 6.3 years ago by • 0
3
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4
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1.0k
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Is number of rotations dependent on number of gene sets in mroast?
limma mroast
updated 6.3 years ago by 51k • written 6.3 years ago by • 0
0
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3
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2.1k
views
Barcodeplot limma function using two logFC lists
limma edger barcodeplot gene set enrichment mroast
updated 6.8 years ago by 51k • written 6.8 years ago by • 0
0
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6
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2.1k
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Different results obtained from mroast and camera from Deseq2 counts
limma camera mroast tximport
updated 7.4 years ago by 67k • written 7.4 years ago by ▴ 40
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2
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1.7k
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using camera/roast/romer to find enriched gene sets from proteomics data
limma proteomics camera mroast romer
updated 8.1 years ago by 51k • written 8.1 years ago by • 0
2
votes
2
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1.5k
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limma roast/mroast with patient-matched pre-/post- treatment
limma roast mroast block
updated 8.4 years ago by ★ 7.9k • written 8.4 years ago by • 0
2
votes
2
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1.4k
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Running Roast with Gene Symbols of Curated Genes
mroast roast gene set gene set analysis edgeR
updated 8.5 years ago by 67k • written 8.5 years ago by • 0
0
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3
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1.6k
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ROAST using curated gene sets
edgeR mroast roast
8.5 years ago lattalic • 0
8
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4
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6.2k
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Differences between edgeR's and limma+voom's implementation of camera/roast/romer
limma edger mroast romer camera
updated 8.8 years ago by ★ 13k • written 8.8 years ago by ▴ 180
7
votes
6
replies
3.4k
views
Interpretation of mroast gene set analysis in R and appropriate use of the function barcode plot regarding a microarray dataset
limma mroast barcodeplot KEGG gene set testing
updated 9.0 years ago by 51k • written 9.0 years ago by ▴ 830
7
votes
9
replies
3.2k
views
limma's mroast and romer
romer mroast limma
updated 9.2 years ago by 51k • written 9.2 years ago by ▴ 10
7
votes
10
replies
1.9k
views
Possible TF binding site enrichment analysis through mroast and conversion problems
TF binding site analysis bioconductor mroast limma promoter analysis
updated 9.4 years ago by ★ 28k • written 9.4 years ago by ▴ 830
5
votes
11
replies
2.0k
views
Appropriate methodologies for using various inputs(GOs, gene-sets) for mroast testing
limma mroast GSEA GO illumina human ht-12 v4
updated 9.5 years ago by ★ 28k • written 9.5 years ago by ▴ 830
0
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1
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1.7k
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Graphic representation of mroast results
mroast visualization
9.5 years ago Elena Serrano ▴ 30
6
votes
10
replies
2.0k
views
Possible implementation of roast/mroast for testing common DE patterns across two different experiments
gene set testing roast mroast differential gene expression bioconductor
9.5 years ago svlachavas ▴ 830
0
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4
replies
1.7k
views
Argument gene.data for the correct implementation of fuction pathview of the pathview package
mroast limma pathview pathway analysis
updated 9.7 years ago by ★ 1.6k • written 9.7 years ago by ▴ 830
2
votes
6
replies
1.8k
views
Appropriate use of the function mroast to find KEGG pathways for differential expression
mroast limma pathway analysis differential gene expression affymetrix
9.7 years ago svlachavas ▴ 830
22 results • Page 1 of 1
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Replies
Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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