Showing : mroast • reset
0
votes
0
replies
801
views
Interpretation of mroast p-value results for gene set testing of specific molecular signatures using microarray data
mroast camera gene set testing
4.4 years ago svlachavas ▴ 840
4
votes
4
replies
1.7k
views
Interpreting mroast results
mroast limma roast
6.3 years ago • updated 6.2 years ago SB • 0
1
vote
2
replies
1.6k
views
Explanation of mroast results for specific biological processes and error with barcodeplot function with a microarray dataset
limma mroast agilent microarrays GO.BP barcodeplot
updated 6.4 years ago by 52k • written 6.4 years ago by ▴ 840
2
votes
3
replies
1.6k
views
Perform limma based gene-set testing for a two-group comparison in a microarray dataset regarding specific biological processes
limma agilent microarrays mroast fry gene tests gene set testing
updated 6.4 years ago by 52k • written 6.4 years ago by ▴ 840
0
votes
2
replies
1.1k
views
mroast/fry with gene weights for most or all genes
limma mroast fry
updated 6.5 years ago by 52k • written 6.5 years ago by ▴ 180
3
votes
3
replies
1.2k
views
Conditions for using Fry
limma mroast fry
updated 6.6 years ago by 52k • written 6.6 years ago by • 0
3
votes
4
replies
1.1k
views
Is number of rotations dependent on number of gene sets in mroast?
limma mroast
updated 6.6 years ago by 52k • written 6.6 years ago by • 0
0
votes
3
replies
2.2k
views
Barcodeplot limma function using two logFC lists
limma edger barcodeplot gene set enrichment mroast
updated 7.1 years ago by 52k • written 7.1 years ago by • 0
0
votes
6
replies
2.2k
views
Different results obtained from mroast and camera from Deseq2 counts
limma camera mroast tximport
updated 7.7 years ago by 68k • written 7.7 years ago by ▴ 40
0
votes
2
replies
1.7k
views
using camera/roast/romer to find enriched gene sets from proteomics data
limma proteomics camera mroast romer
updated 8.4 years ago by 52k • written 8.4 years ago by • 0
2
votes
2
replies
1.6k
views
limma roast/mroast with patient-matched pre-/post- treatment
limma roast mroast block
updated 8.6 years ago by ★ 7.9k • written 8.6 years ago by • 0
2
votes
2
replies
1.4k
views
Running Roast with Gene Symbols of Curated Genes
mroast roast gene set gene set analysis edgeR
updated 8.7 years ago by 68k • written 8.7 years ago by • 0
0
votes
3
replies
1.7k
views
ROAST using curated gene sets
edgeR mroast roast
8.7 years ago lattalic • 0
8
votes
4
replies
6.5k
views
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
limma edger mroast romer camera
updated 9.1 years ago by ★ 13k • written 9.1 years ago by ▴ 180
7
votes
6
replies
3.5k
views
Interpretation of mroast gene set analysis in R and appropriate use of the function barcode plot regarding a microarray dataset
limma mroast barcodeplot KEGG gene set testing
updated 9.3 years ago by 52k • written 9.3 years ago by ▴ 840
7
votes
9
replies
3.4k
views
limma's mroast and romer
romer mroast limma
updated 9.4 years ago by 52k • written 9.4 years ago by ▴ 10
7
votes
10
replies
2.0k
views
Possible TF binding site enrichment analysis through mroast and conversion problems
TF binding site analysis bioconductor mroast limma promoter analysis
updated 9.7 years ago by ★ 28k • written 9.7 years ago by ▴ 840
5
votes
11
replies
2.1k
views
Appropriate methodologies for using various inputs(GOs, gene-sets) for mroast testing
limma mroast GSEA GO illumina human ht-12 v4
updated 9.7 years ago by ★ 28k • written 9.7 years ago by ▴ 840
0
votes
1
reply
1.8k
views
Graphic representation of mroast results
mroast visualization
9.7 years ago Elena Serrano ▴ 30
6
votes
10
replies
2.1k
views
Possible implementation of roast/mroast for testing common DE patterns across two different experiments
gene set testing roast mroast differential gene expression bioconductor
9.8 years ago svlachavas ▴ 840
0
votes
4
replies
1.8k
views
Argument gene.data for the correct implementation of fuction pathview of the pathview package
mroast limma pathview pathway analysis
updated 9.9 years ago by ★ 1.6k • written 9.9 years ago by ▴ 840
2
votes
6
replies
1.9k
views
Appropriate use of the function mroast to find KEGG pathways for differential expression
mroast limma pathway analysis differential gene expression affymetrix
9.9 years ago svlachavas ▴ 840
22 results • Page 1 of 1
Recent ...
Replies
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Answer: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
I strongly recommend to not concern yourself with these sorts of marginal problems because you're entering a realm in which you're entirely…
Comment: Problem using locateVariants() from the VariantAnnotation package by Marco • 0
Ok, I think I found the problem. By looking at the `locateVariants()` source code, I was able to pinpoint that the problems is when trying …
Comment: Conumee for EPIC and EPICv2 copy number by Adam • 0
As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…
Comment: graper 1.22 Build is Broken by shepherl 4.1k
This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
Awards • All
Popular Question to Matthew McCormack ▴ 180
Popular Question to James W. MacDonald 68k
Popular Question to shepherl 4.1k
Popular Question to Marco • 0
Popular Question to Stefano Mangiola ▴ 40
Locations • All
The city by the bay, 2 minutes ago
Germany, 11 minutes ago
Uzbekistan, 52 minutes ago
Pakistan, 57 minutes ago
United States, 4 hours ago
Traffic: 621 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6