Showing : monocle • reset
1
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746
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Differentially expressed genes in monocle pseudotime
monocle
updated 10 months ago by 52k • written 11 months ago by • 0
0
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2
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628
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Singlecell protein surface (ADT) pseudotime techniques
monocle slingshot
17 months ago EspressoKris ▴ 10
0
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0
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707
views
weighting sample group
monocle SingleCell DifferentialExpression
2.5 years ago Sogand • 0
2
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4
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3.2k
views
Trajectory analysis for single cell sequencing
single cell trajectory analysis tscan monocle
updated 4.6 years ago by ★ 28k • written 4.6 years ago by ▴ 50
0
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1
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3.8k
views
How to customize the color in 'plot_cell_trajectory' function
scRNA seq monocle
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by • 0
0
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1
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3.2k
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Pseudotime analysis on bulk RNASeq using monocle
pseudotime monocle dimensionality
5.2 years ago pbachali ▴ 50
0
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1
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5.6k
views
monocle error at orderCells
scRNA monocle packages Tutorial
5.5 years ago 444579004 • 0
5
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3
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1.8k
views
Setting gene expression thresholds for trajectory analysis using Monocle
monocle differential gene expression detectgenes function Tutorial
6.1 years ago S.Webb6 ▴ 40
1
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1
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2.9k
views
Mean Expression Calculation scRNA-seq (All cells or only Expressed Cells)
scrnaseq monocle
updated 6.8 years ago by ▴ 980 • written 6.8 years ago by ▴ 10
0
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1
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1.9k
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Converting scater-normalized UMI data to Monocle CellDataSet
scater scran umi monocle
updated 6.9 years ago by ★ 28k • written 6.9 years ago by • 0
0
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1
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2.3k
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monocle: Error in if (cds@expressionFamily@vfamily %in% c("negbinomial", "negbinomial.size"))
monocle
7.1 years ago • updated 7.0 years ago Mehmet Ilyas Cosacak • 0
1
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5
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3.0k
views
Monocle causes R session to crash
software error monocle
updated 7.7 years ago by ▴ 350 • written 9.3 years ago by ▴ 10
0
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0
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1.7k
views
Documentation of "branch_states" and "branch_labels" arguments
monocle
7.7 years ago kevin.rue ▴ 350
0
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0
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3.1k
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Monocle plot_pseudotime_heatmap : Error in cutree(tree, cutree_n) : elements of 'k' must be between 1 and 3
R monocle
7.7 years ago A.H • 0
3
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1
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1.4k
views
Normalizing vs RNA content in scRNAseq data
monocle scran
updated 7.7 years ago by ★ 28k • written 7.7 years ago by ▴ 40
0
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3
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1.6k
views
Batch effects and model matrices
deseq2 single cell monocle
updated 7.7 years ago by 43k • written 7.7 years ago by • 0
0
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0
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1.3k
views
Basic Question: How to get appropriate pDATA structure in monocle from cufflinks/cuffnorm
cufflinks monocle
7.8 years ago alexandriapinto1 ▴ 10
0
votes
1
reply
1.3k
views
Monocle group sizes
monocle
7.9 years ago ribioinfo ▴ 100
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1
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3.9k
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error in monocle.
monocle
updated 8.0 years ago by • 0 • written 8.0 years ago by • 0
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0
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2.0k
views
Monocle-strange differential expression results
monocle differential expression
9.2 years ago sunil.mangalam • 0
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0
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1.7k
views
error: no slot of name "expressionFamily" for this object of class "CellDataSet"
monocle bugs
9.3 years ago wanghao1993333 • 0
1
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2
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2.0k
views
Error message running DE-test in Monocle
monocle cummerbund DE rnaseq
updated 9.7 years ago by • 0 • written 9.9 years ago by ▴ 260
22 results • Page 1 of 1
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Comment: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf by AB ▴ 110
Force=TRUE did the trick. Thank you.
Comment: www.stats.ox.ac.uk seems to be off, leading to errors/delays when installing pac by DENG • 0
[https://github.com/djunsheep/CRANextra/blob/main/README.md][1] add the following to the `.Rprofile` and `Rprofile.site` # fixing the…
Comment: Transcript ID Mismatch in riboWaltz Annotation Table by shepherl 4.1k
riboWalze is not a Bioconductor package and does not appear to be a Bioconductor function; the maintainer is not guaranteed to be on this …
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf by shepherl 4.1k
What is your `sessionInfo()`? I just tried locally and it works fine so there might have been a bad or interrupted download when initially…
Comment: error in ChAMP loading file by shocked.tick.zyet • 0
Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…
Votes
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
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