Showing : moe430a • reset
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Annotation.db: how automatically call a mapping?
Annotation GO moe430a affy limma annaffy affycoretools Annotation GO moe430a affy limma
15.6 years ago James W. MacDonald 68k
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read cel file of moe430a
moe430a moe430a
updated 15.6 years ago by ★ 1.2k • written 15.6 years ago by ▴ 10
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Annotation.db: how automatically call a mapping?
Annotation moe430a Annotation moe430a
updated 15.6 years ago by 25k • written 15.6 years ago by ★ 4.1k
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multtest: how to adjust multiple contrasts in a single run?
moe430a multtest affy limma moe430a multtest affy limma
15.6 years ago Guido Hooiveld ★ 4.1k
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Annotation for Mouse 430 2.0 and Human Genome U133 Plus 2.0 Arrays
hgu133plus2 moe430a hgu133plus2 moe430a
16.0 years ago MARIA STALTERI ▴ 160
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Moe430A and Moe430B join
moe430a moe430b mouse4302 gcrma marray moe430a moe430b mouse4302 gcrma marray
16.6 years ago Matyas Flemr ▴ 10
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782
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combining samples before normalization
Normalization moe430a probe Normalization moe430a probe
16.6 years ago Lana Schaffer ★ 1.3k
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The mis-match platform read by bioconductor --> MOE430B
moe430a moe430b moe430a moe430b
updated 17.3 years ago by ★ 1.2k • written 17.3 years ago by ▴ 260
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affTableAnn error
hgu133a2 moe430a mouse430a2 cdf limma matchprobes hgu133a2 moe430a mouse430a2 cdf limma
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ★ 2.0k
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http://mail.google.com/mail/?ik=c8b0ad881f&view=cm&fs=1&tf=1&to=Bioconductor%40stat.math.ethz.ch&zx=x780aw-ixfpz3TFBSand Biconductor
Microarray moe430a Microarray moe430a
18.3 years ago Stephen Henderson ★ 1.0k
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problem with moe430a version 1.12.0?
hgu133a hgu133plus2 moe430a moe430b rae230b probe hgu133a hgu133plus2 moe430a moe430b
18.8 years ago MARIA STALTERI ▴ 160
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2.0k
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metadata - annotation package changes
Annotation moe430a probe Annotation moe430a probe
updated 19.5 years ago by ★ 2.9k • written 19.5 years ago by ▴ 160
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822
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BioC problem: cannot install moe430a
moe430a moe430a
updated 19.5 years ago by ★ 7.4k • written 19.5 years ago by ▴ 430
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BioC problem: cannot install moe430a
moe430a moe430a
19.5 years ago Arthur Liberzon ▴ 10
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moe430a and moe430av2 comparison
moe430a cdf probe reposTools affy moe430a cdf probe reposTools affy
19.5 years ago Margaret Gardiner-Garden ▴ 160
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Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
updated 19.6 years ago by ★ 1.4k • written 19.6 years ago by ★ 1.1k
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Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
19.6 years ago Dick Beyer ★ 1.4k
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annotation packages and ACCNUM mappings
Annotation moe430a rae230a Annotation moe430a rae230a
updated 19.6 years ago by ▴ 780 • written 19.6 years ago by ▴ 160
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810
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Negative Values (?!) loaded by affy package from CEL file of MOE430A
moe430a cdf moe430a cdf
19.7 years ago lgautier@altern.org ▴ 950
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707
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Negative Values (?!) loaded by affy package from CEL file of MOE430A
moe430a cdf moe430a cdf
19.7 years ago Simon Lin ▴ 270
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1
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1.1k
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annotation packages and goTools
Annotation moe430a moe430b goTools Annotation moe430a moe430b goTools
updated 20.0 years ago by ★ 2.9k • written 20.0 years ago by ▴ 300
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832
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quality analysis
moe430a moe430a
updated 20.0 years ago by ★ 5.5k • written 20.0 years ago by ▴ 210
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Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
moe430a cdf simpleaffy moe430a cdf simpleaffy
20.1 years ago Crispin Miller ★ 1.1k
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855
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Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
moe430a cdf simpleaffy moe430a cdf simpleaffy
20.1 years ago Dick Beyer ★ 1.4k
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880
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Problem with aafSymbol
hgu95av2 moe430a annaffy hgu95av2 moe430a annaffy
20.2 years ago Jeff Lande ▴ 110
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1.1k
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QC stats plot
moe430a simpleaffy moe430a simpleaffy
updated 20.2 years ago by ★ 5.5k • written 20.2 years ago by ▴ 110
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965
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QC stats plot
moe430a simpleaffy moe430a simpleaffy
20.2 years ago Crispin Miller ★ 1.1k
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1
reply
704
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Problems with MOE430B array metadata (?)
Annotation moe430a moe430b Annotation moe430a moe430b
updated 20.3 years ago by 68k • written 20.3 years ago by ▴ 100
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1.4k
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Installing Rv2.0.0 on MacOS 10.3.x
moe430a cdf probe annotate genefilter reposTools affy annaffy moe430a cdf probe affy
20.3 years ago rkakkar@uchicago.edu ▴ 100
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1.5k
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error in loading affy (R 2.0), Thank you
Normalization GO Clustering moe430a moe430b probe Ruuid rhdf5 multtest affy graph limma
20.3 years ago Pintilie, Melania ▴ 50
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1
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817
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Combining MOE430A and MOE4302
moe430a moe430b probe moe430a moe430b probe
updated 20.3 years ago by ★ 13k • written 20.3 years ago by ▴ 300
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3
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1.2k
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moe430v2 annotation package
Annotation moe430a moe430b probe AnnBuilder Annotation moe430a moe430b probe AnnBuilder
updated 20.3 years ago by ★ 2.9k • written 20.3 years ago by ▴ 100
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831
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moe430v2 annotation package
Annotation moe430a moe430b probe Annotation moe430a moe430b probe
20.3 years ago John Zhang ★ 2.9k
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1.1k
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problem with "just.gcrma" and a fix
moe430a probe moe430a probe
updated 20.4 years ago by 68k • written 20.4 years ago by ▴ 110
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2
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1.1k
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GCRMA fails with MOE430A Only
moe430a cdf probe gcrma PROcess moe430a cdf probe gcrma PROcess
updated 20.5 years ago by 68k • written 20.5 years ago by ▴ 340
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974
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bug in moe430a annotation packages
Annotation moe430a rae230a probe Annotation moe430a rae230a probe
updated 20.5 years ago by ★ 2.9k • written 20.5 years ago by ▴ 160
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2
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861
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problem with MOE430a annotation & NetAffx correspondence
Annotation GO moe430a Annotation GO moe430a
updated 20.5 years ago by ★ 2.9k • written 20.5 years ago by ▴ 290
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1
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1.0k
views
Expression on different Affy arrays
moe430a probe moe430a probe
updated 20.7 years ago by ▴ 220 • written 20.7 years ago by ▴ 70
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2
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1.6k
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warning messages in gcrma
Microarray Normalization Cancer moe430a moe430b cdf probe affy gcrma siggenes GeneSpring
updated 20.9 years ago by 68k • written 20.9 years ago by ▴ 210
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1
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1.3k
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Warning message with dChip method
Annotation Normalization GO Cancer moe430a moe430b cdf affy limma gcrma annaffy PROcess
updated 20.9 years ago by ★ 2.3k • written 20.9 years ago by ▴ 210
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8
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1.9k
views
MOE430 A and B
moe430a moe430b cdf affy moe430a moe430b cdf affy
updated 20.9 years ago by ▴ 310 • written 20.9 years ago by ▴ 300
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1.1k
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RE: Bioconductor Digest, Vol 13, Issue 27
Proteomics Normalization GO Preprocessing Clustering moe430a moe430b cdf probe affy GO
20.9 years ago Victor M Trevino-Alvarado ▴ 20
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831
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error in annaffy
Annotation mgu74av2 moe430a probe affy Annotation mgu74av2 moe430a probe affy
21.0 years ago marlena.maziarz@utoronto.ca ▴ 10
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2
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816
views
GCRMA error
moe430a moe430a
updated 21.3 years ago by ▴ 410 • written 21.3 years ago by ▴ 10
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1
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923
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Installing metadata packages..
moe430a cdf probe moe430a cdf probe
updated 21.3 years ago by 68k • written 21.3 years ago by ▴ 20
45 results • Page 1 of 1
Recent ...
Replies
Comment: Why the order of sample names in the beta matrix affect the analysis results of by 81becky • 0
It sounds like you're experiencing a common issue with data alignment in Champ.DMP. Ensure that your beta matrix and PD files are consisten…
Comment: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis by Blair • 0
@[Sprunki][1] wrote: Please read the vignette and think about adhering to the author's best practice, which discusses batch impacts. [1…
Comment: error in ChAMP loading file by 81becky • 0
hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…
Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0
Thank you, I will try this and see.
Votes
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
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