Bioconductor Model

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970

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DESeq2 model

updated 3 months ago by Michael Love 42k • written 4 months ago by picasa1983 • 0

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892

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DESeq2 LRT Model

updated 2.7 years ago by Michael Love 42k • written 2.7 years ago by JaneDoe • 0

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1.2k

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model BatchEffect hidden Design DESeq2

3.1 years ago m.glymenaki • 0

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1.2k

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DESeq2 ErrorincheckFullRank(modelMatrix) model

updated 4.0 years ago by Michael Love 42k • written 4.0 years ago by Isabelle • 0

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1.1k

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diffbind blocking model

updated 4.0 years ago by Rory Stark ★ 5.2k • written 5.1 years ago by melnuesch ▴ 10

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1.2k

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deseq2 interaction model

updated 4.4 years ago by Michael Love 42k • written 4.4 years ago by aec ▴ 90

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2.2k

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limma dose-response linear model model formula

updated 7.0 years ago by James W. MacDonald 67k • written 7.0 years ago by biominer ▴ 10

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2.5k

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edgeR edger "glmqlftest()" timecourse model

updated 7.3 years ago by Ryan C. Thompson ★ 7.9k • written 7.3 years ago by heikki.sarin ▴ 10

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2.5k

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egdeR multiple time points model.matrix differential exon usage model

7.3 years ago heikki.sarin ▴ 10

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1.3k

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dexseq timecourse model.matrix model

7.3 years ago heikki.sarin ▴ 10

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1.6k

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dexseq rna-seq model.matrix model

updated 7.3 years ago by Michael Love 42k • written 7.3 years ago by heikki.sarin ▴ 10

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1.8k

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EdgeR rank model

7.4 years ago • updated 7.3 years ago philip.freda • 0

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2.0k

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deseq2 experimental design timecourse rnaseq model

updated 8.1 years ago by Michael Love 42k • written 8.1 years ago by athief ▴ 20

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1.0k

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Deseq2 model

8.3 years ago jrivera • 0

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3.2k

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deseq2 model

updated 9.4 years ago by Simon Anders ★ 3.8k • written 9.4 years ago by da.de ▴ 30

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2.4k

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limma goodness fit linear model

updated 9.8 years ago by Gordon Smyth 51k • written 9.8 years ago by nonCodingGene ▴ 10

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9.3k

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DESeq2 linear model model

updated 3.5 years ago by Michael Love 42k • written 10.0 years ago by andrew.j.skelton73 ▴ 370

17 results • Page 1 of 1

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Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

Comment: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…

Votes

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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